RetrogeneDB ID: | retro_etel_1075 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_207010:13355..13678(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSETEG00000018667 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 82.57 % |
Parental protein coverage: | 72.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ADQLTEEQIAEFKEAF-SLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
ADQLTE.QIA...E.F.SLFDK.GDGT.TTKELGT.MRS.GQNPTEAELQDMINEVDADGNGT.DFPEFL | |
Retrocopy | ADQLTEGQIADLTEVF<SLFDKNGDGTLTTKELGTLMRSRGQNPTEAELQDMINEVDADGNGTMDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHV |
.MMARKMKDTDSE.EIREAFRVFDK.G.GY.S..EL.HV | |
Retrocopy | IMMARKMKDTDSEGEIREAFRVFDKEGGGYVSVPELYHV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000015712 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008245 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000012181 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000000040 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009377 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000018667 | 16 retrocopies | |
Ficedula albicollis | ENSFALG00000012828 | 1 retrocopy | |
Gadus morhua | ENSGMOG00000009342 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000005059 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009865 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000029016 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000017466 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009222 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008824 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000003323 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012430 | 5 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000013173 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008433 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000002581 | 1 retrocopy |