RetrogeneDB ID: | retro_eeur_561 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_344729:4683..5128(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSEEUG00000000040 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 93.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT |
ADQLTEE.IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT | |
Retrocopy | ADQLTEEPIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT |
Parental | MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE-MIREADIDGDGQVNYE |
MMARKMKDT.SEEEIREAF.VFDKD.NGYISAAELRHVMTNLGEKLTDEEVD..MIREAD.DGDG..NYE | |
Retrocopy | MMARKMKDTGSEEEIREAFHVFDKDANGYISAAELRHVMTNLGEKLTDEEVDI>MIREADTDGDG*INYE |
Parental | EFVQMMTAK |
EFVQMM.AK | |
Retrocopy | EFVQMMIAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .02 RPM | 484 .56 RPM |
SRP017611_kidney | 4 .69 RPM | 169 .91 RPM |
SRP017611_liver | 1 .61 RPM | 26 .21 RPM |