RetrogeneDB ID: | retro_eeur_456 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_310726:35072..35372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTF3L4 | ||
Ensembl ID: | ENSEEUG00000004502 | ||
Aliases: | None | ||
Description: | basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547] |
Percent Identity: | 64.42 % |
Parental protein coverage: | 63.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILS-QLGADSLTSLRKLAEQFPRQVLD |
NMI.DDGT.I.FNN..VQA..SAN.FAIT..AEAK..TEMLPG..S.QL.ADSLTSL.KL.E....QVLD | |
Retrocopy | NMITDDGTAIYFNNL*VQAPISANAFAITRCAEAKSYTEMLPGMSS<QLDADSLTSLSKLSE*LSSQVLD |
Parental | SKAP-KPEDI-DEEDDDVPDLVENFDEASKNEAN |
SKAP.KPE...D.E.DD.PD.VENFD.......N | |
Retrocopy | SKAP<KPERL<DKEEDDFPDHVENFDKVNETYCN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .94 RPM |
SRP017611_liver | 0 .00 RPM | 12 .54 RPM |