RetrogeneDB ID: | retro_rnor_1870 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:22907611..22907898(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1561589 | ||
Ensembl ID: | ENSRNOG00000008512 | ||
Aliases: | Btf3l4, RGD1311774 | ||
Description: | Protein Btf3l4; RCG50485, isoform CRA_a [Source:UniProtKB/TrEMBL;Acc:D4A3I4] |
Percent Identity: | 57.84 % |
Parental protein coverage: | 62.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VNMIKDDGTVI-HFNNPKVQASL-SANTFAITGHAEAKPITEML-PGILSQLGADSLTSLRKLAEQFPR- |
.NMI.DD......FN.P...ASL.S..TFAITGHAEAKP.TEML..GILSQLGA..L..L..LAE..... | |
Retrocopy | LNMI*DDDETV<YFNSPNFHASL<SHKTFAITGHAEAKPVTEML<SGILSQLGAFILKRLTNLAESLHD< |
Parental | QVLDSKAPKPEDIDEEDDDVPDLVENFDEASK |
Q.L.SK.P.PED.D.ED...P..VEN.DE..K | |
Retrocopy | QILTSKPPMPEDFD-EDNNIPGSVENVDEHQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .75 RPM |
SRP017611_liver | 0 .00 RPM | 7 .53 RPM |