RetrogeneDB ID:

retro_ogar_2818

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873667.1:3484463..3484766(+)
Located in intron of:ENSOGAG00000024389
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:LSM3
Ensembl ID:ENSOGAG00000007659
Aliases:None
Description:LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874]


Retrocopy-Parental alignment summary:






>retro_ogar_2818
ATGGCGAACAACATGCACCAGCAACAAACTACCAACGCTGTAGAGAAGCCTCTAGATCTTATCAGGCTCAGCCTGAATAA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTACGGAGCAGATTACATGCTTATGATCAACATTTAAATATGATAT
ACGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACAAAACGG
AACATTCCAATGCTTTTTGTCCGAGGAGATGGCGTTGTCCTGGTTGCCCCTCCATTGAGAGTT

ORF - retro_ogar_2818 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.1 %
Parental protein coverage: 99.02 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET
MA....QQQTTN.VE.PLDLIRLSL..RIYVKMRNDRELR.RLHAYDQHLNMI.GDVEETVTTIEIDEET
RetrocopyMANNMHQQQTTNAVEKPLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEET
ParentalYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV
YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV
RetrocopyYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2818 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 78 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000094053 retrocopies
Callithrix jacchus ENSCJAG000000169771 retrocopy
Cavia porcellus ENSCPOG000000066711 retrocopy
Dasypus novemcinctus ENSDNOG000000180327 retrocopies
Echinops telfairi ENSETEG000000162078 retrocopies
Gorilla gorilla ENSGGOG000000100064 retrocopies
Loxodonta africana ENSLAFG000000233081 retrocopy
Myotis lucifugus ENSMLUG000000106774 retrocopies
Monodelphis domestica ENSMODG000000072751 retrocopy
Mus musculus ENSMUSG000000341922 retrocopies
Nomascus leucogenys ENSNLEG000000050796 retrocopies
Oryctolagus cuniculus ENSOCUG000000110881 retrocopy
Otolemur garnettii ENSOGAG00000007659 6 retrocopies
Oreochromis niloticus ENSONIG000000003701 retrocopy
Pongo abelii ENSPPYG000000134024 retrocopies
Pan troglodytes ENSPTRG000000146505 retrocopies
Pteropus vampyrus ENSPVAG000000167951 retrocopy
Rattus norvegicus ENSRNOG000000087331 retrocopy
Sus scrofa ENSSSCG000000116016 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000068421 retrocopy
Tupaia belangeri ENSTBEG0000000105011 retrocopies
Tursiops truncatus ENSTTRG000000111971 retrocopy
Vicugna pacos ENSVPAG000000107092 retrocopies



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