RetrogeneDB ID: | retro_tbel_2860 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_12129:45310..45615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM3 | ||
Ensembl ID: | ENSTBEG00000001050 | ||
Aliases: | None | ||
Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874] |
Percent Identity: | 81.55 % |
Parental protein coverage: | 99.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQH-LNMILGDVEETVTTIEIDEE |
MADDVDQ.QTTNTVEEPLDLIRLSLDERIYVK.R.D.ELRG.LHAYDQH.LNMILGDVEETVTTIEIDEE | |
Retrocopy | MADDVDQRQTTNTVEEPLDLIRLSLDERIYVKTRDDPELRGSLHAYDQH<LNMILGDVEETVTTIEIDEE |
Parental | TYEEIYKSTKRNFYILFVPVEGRLLVAPPWRLG |
T.EEIYKS.KRN...LFV...G..LV.PP.R.G | |
Retrocopy | T*EEIYKSMKRNIPMLFVRGDGVVLVTPPLRVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |