RetrogeneDB ID: | retro_mmus_2446 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:34282132..34282438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lsm3 | ||
Ensembl ID: | ENSMUSG00000034192 | ||
Aliases: | Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2 | ||
Description: | LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914928] |
Percent Identity: | 80.39 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MADDVDQQQTT-NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEE |
M.D.VDQQQT...TVEEPLDLIRLSL.E.IYVK.R.D..L.GRLHAYDQHLNMILGDVE.TV..IEIDEE | |
Retrocopy | MVDSVDQQQTPIPTVEEPLDLIRLSLAEQIYVKIRSD*VLPGRLHAYDQHLNMILGDVEGTVKMIEIDEE |
Parental | TYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV |
TYEEI.KSTK.NI.MLFV.GDG.VLVAPPLRV | |
Retrocopy | TYEEIDKSTK*NISMLFVQGDGGVLVAPPLRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .56 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .12 RPM |
SRP007412_heart | 0 .00 RPM | 14 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .57 RPM |
SRP007412_liver | 0 .00 RPM | 4 .01 RPM |
SRP007412_testis | 0 .00 RPM | 14 .96 RPM |