RetrogeneDB ID: | retro_etel_580 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_9143:284071..284893(-) | ||
Located in intron of: | ENSETEG00000001541 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSETEG00000002661 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
Percent Identity: | 98.54 % |
Parental protein coverage: | 69.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE |
DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPL.TPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE | |
Retrocopy | DKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLETPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLE |
Parental | EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAV |
EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV.TSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAV | |
Retrocopy | EKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVLTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAV |
Parental | IGVLMDDTDALVTLMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG |
IGVLMDDTDALVTLMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG | |
Retrocopy | IGVLMDDTDALVTLMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPG |
Parental | TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK |
TGKTLLAKAVANQTSAT.LRVV.SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK | |
Retrocopy | TGKTLLAKAVANQTSATLLRVVASELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001839 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000017510 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013595 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006458 | 1 retrocopy | |
Equus caballus | ENSECAG00000003601 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002661 | 1 retrocopy |
retro_etel_580 ,
|
Felis catus | ENSFCAG00000011310 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000001526 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007471 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022990 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008150 | 4 retrocopies | |
Mus musculus | ENSMUSG00000021178 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006231 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000032343 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025948 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010020 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000013582 | 1 retrocopy |