Parental gene:

PSMC1, ENSECAG00000003601

Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547]
Organism:Horse (Equus caballus)
Coordinates:24:33663777..33673650(+)


>ENSECAG00000003601
CAGGGTCAAAGTCAGAGTGGTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATATGAACC
TCCCGTGCCAACTCGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCTAGCAAACTGCCACTGGTGACAC
CTCACACTCAGTGCCGGTTAAAATTATTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAGCCTTTAGAGGAAAAGCAAGAGGAGGAAAGATCAAAGGTGGATGACCTGAGAGGGACCCCAAT
GTCGGTAGGGACCTTGGAAGAGATCATTGATGACAATCACGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCATTTGTAGACAAGGATCTGCTGGAACCGGGCTGCTCCGTGCTGCTCAACCACAAGGTGCATGCTGTGATA
GGGGTGCTGATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCTCAGGAGACCTATGCTGATAT
TGGAGGGTTGGACAACCAAATTCAGGAAATTAAGGAATCTGTGGAGCTTCCCCTCACTCATCCTGAATATTACGAAGAGA
TGGGTATAAAGCCCCCTAAGGGGGTCATTCTCTATGGTCCACCTGGCACAGGTAAAACCTTATTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACCTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTAGGCGATGGGCCCAAACTTGT
TCGGGAATTGTTTCGAGTTGCTGAAGAACATGCACCATCCATCGTGTTTATTGATGAAATTGATGCCATTGGGACAAAAA
GGTATGACTCAAATTCTGGTGGGGAGAGAGAAATTCAGCGAACGATGTTAGAACTGTTGAACCAGTTGGATGGATTTGAT
TCAAGGGGAGACGTGAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGACCCAGCACTTATCAGACCAGGCCGCAT
TGACAGGAAGATCGAGTTCCCCCTGCCTGATGAGAAGACCAAGAAGCGCATCTTTCAGATCCACACCAGCAGGATGACGC
TGGCTGACGACGTTACCCTGGACGACTTGATCATGGCTAAAGACGACCTGTCCGGTGCCGACATCAAGGCAATCTGTACA
GAAGCTGGTCTGATGGCCTTGAGAGAACGCAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAAAATGTCCT
TTATAAGAAGCAGGAAGGCACCCCTGAGGGGCTGTATCTCTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 42 .91 RPM
SRP021940_cerebellum 88 .18 RPM
SRP021940_embryo 92 .93 RPM
SRP021940_placental_villous 93 .58 RPM
SRP021940_synovial_membrane 52 .35 RPM
SRP021940_testis 191 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001839 ortholog_one2one 4 retrogenes
retro_amel_1536, retro_amel_1886, retro_amel_405, retro_amel_962,
Canis familiaris ENSCAFG00000017510 ortholog_one2many 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Echinops telfairi ENSETEG00000002661 ortholog_one2one 1 retrogene
retro_etel_580,
Felis catus ENSFCAG00000011310 ortholog_one2one 8 retrogenes
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Myotis lucifugus ENSMLUG00000007471 ortholog_one2one 2 retrogenes
retro_mluc_2490, retro_mluc_508,
Macaca mulatta ENSMMUG00000022990 possible_ortholog 1 retrogene
retro_mmul_255,
Mustela putorius furo ENSMPUG00000008150 ortholog_one2one 4 retrogenes
retro_mputfur_1602, retro_mputfur_409, retro_mputfur_654, retro_mputfur_815,
Mus musculus ENSMUSG00000021178 ortholog_one2one 3 retrogenes
retro_mmus_1517, retro_mmus_1826, retro_mmus_812,
Oryctolagus cuniculus ENSOCUG00000006231 ortholog_one2one 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 possible_ortholog 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 possible_ortholog 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pteropus vampyrus ENSPVAG00000010020 ortholog_one2one 3 retrogenes
retro_pvam_1190, retro_pvam_350, retro_pvam_500,
Tursiops truncatus ENSTTRG00000013582 ortholog_one2one 1 retrogene
retro_ttru_239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_355 81.85 68.41
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Download FASTA sequences of all ENSECAG00000003601 retrocopies