RetrogeneDB ID: | retro_fcat_1481 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:49753730..49754078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC19 | ||
Ensembl ID: | ENSFCAG00000010591 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528] |
Percent Identity: | 80.17 % |
Parental protein coverage: | 89.92 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | ASTVVAVGLTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGISP |
AS...AVGLT.AAAGFAG.YVLQAMK.MEPQ..Q.FQSL.KSAFSGGYYRG.FE.KMTK.EAALILG.SP | |
Retrocopy | ASIGAAVGLTMAAAGFAGCYVLQAMKYMEPQA*QIFQSLQKSAFSGGYYRGAFELKMTK*EAALILGTSP |
Parental | TANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAKKM |
TANKGKIRDA.....LLNHPDKG.SPYIAAKI.EAKDLL..QAKKM | |
Retrocopy | TANKGKIRDAC**SILLNHPDKGESPYIAAKIKEAKDLLHSQAKKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .41 RPM |
SRP017611_liver | 0 .10 RPM | 38 .52 RPM |