RetrogeneDB ID:

retro_fcat_982

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B4:96404931..96405165(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DNAJC19
Ensembl ID:ENSFCAG00000010591
Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528]


Retrocopy-Parental alignment summary:






>retro_fcat_982
CAAAGTCTACCAAAATCTGTCTTCAGGGGTGGCTCTCACAGAGGTGGGTTTGAACCCAAAATGATAAAATGAGAAGCAGC
ATTAATGCTAGGTGTAAACCCTACTGCCAATAAAGGGAAAATAAGAGATGCTTATCAATGAATGAAGCTTTTAAATCACC
CAGGCAAGGGAGGGTCTCCTTATATGGCAGCCAAAATCAATGAAGCTAAAGATTTACTAGGTCATGCTAAGAAA

ORF - retro_fcat_982 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.22 %
Parental protein coverage: 61.24 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQSLPKSAFSGGYYRGGFEPKMTKREAALILGISPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAK
QSLPKS.F.GG..RGGFEPKM.K.EAAL.LG..PTANKGKIRDA.....LLNHP.KGGSPY.AAKINEAK
RetrocopyQSLPKSVFRGGSHRGGFEPKMIK*EAALMLGVNPTANKGKIRDAYQ*MKLLNHPGKGGSPYMAAKINEAK
ParentalDLLEGQAKK
DLL.G.AKK
RetrocopyDLL-GHAKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 13 .31 RPM
SRP017611_kidney 0 .00 RPM 20 .41 RPM
SRP017611_liver 0 .00 RPM 38 .52 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_982 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_982 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 100 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000122556 retrocopies
Bos taurus ENSBTAG000000235131 retrocopy
Callithrix jacchus ENSCJAG0000001279510 retrocopies
Cavia porcellus ENSCPOG000000211981 retrocopy
Dasypus novemcinctus ENSDNOG000000190671 retrocopy
Erinaceus europaeus ENSEEUG000000069559 retrocopies
Echinops telfairi ENSETEG000000068977 retrocopies
Ficedula albicollis ENSFALG000000082961 retrocopy
Felis catus ENSFCAG00000010591 7 retrocopies
Felis catus ENSFCAG000000226321 retrocopy
Gallus gallus ENSGALG000000088521 retrocopy
Loxodonta africana ENSLAFG000000019105 retrocopies
Microcebus murinus ENSMICG000000103814 retrocopies
Myotis lucifugus ENSMLUG000000068651 retrocopy
Mustela putorius furoENSMPUG000000023367 retrocopies
Otolemur garnettii ENSOGAG0000000875411 retrocopies
Tupaia belangeri ENSTBEG0000001508927 retrocopies



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