RetrogeneDB ID: | retro_fcat_851 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:85906562..85907050(+) | ||
Located in intron of: | ENSFCAG00000029463 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030495 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL24D1 | ||
Ensembl ID: | ENSFCAG00000019272 | ||
Aliases: | None | ||
Description: | ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:18479] |
Percent Identity: | 94.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRIEKCYFCSGPIYPGHGMMF-VRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSF |
M.IEKCYFC.GPIYP.HGMM..VRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSF | |
Retrocopy | MPIEKCYFCLGPIYPSHGMML<VRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSF |
Parental | EFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLA |
EFEK.RNEPVKYQRELW.KTIDAMKRVEEIKQK.QAKFIMNRLKKNK.LQKVQDIKEVKQNIHLIRAPLA | |
Retrocopy | EFEKCRNEPVKYQRELWSKTIDAMKRVEEIKQKCQAKFIMNRLKKNKDLQKVQDIKEVKQNIHLIRAPLA |
Parental | GKGKQLEEKMVQKLQQDVDMEDIS |
GKGKQLEEKMVQKLQQDVDMEDIS | |
Retrocopy | GKGKQLEEKMVQKLQQDVDMEDIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 5 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .64 RPM |
SRP017611_liver | 0 .00 RPM | 3 .64 RPM |