RetrogeneDB - Parental gene ENSFCAG00000019272 details

							
>ENSFCAG00000019272
ATGCGTATTGAGAAGTGTTATTTCTGTTCGGGGCCCATTTACCCCGGCCACGGCATGATGTTTGTCCGCAACGATTGCAA

GGTGTTCAGATTCTGTAAATCCAAGTGTCATAAAAACTTTAAAAAGAAGCGCAATCCTCGCAAGGTCAGGTGGACTAAAG

CATTCCGTAAAGCAGCTGGTAAAGAGCTTACAGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTGTTAAA

TACCAGCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAACGCCAAGCTAAATT

TATAATGAACAGATTAAAGAAAAATAAAGAATTACAGAAAGTTCAGGACATCAAAGAAGTCAAGCAAAACATTCATCTTA

TCCGGGCCCCTCTTGCCGGCAAAGGAAAGCAATTGGAAGAAAAAATGGTGCAGAAATTACAACAGGATGTGGACATGGAA

GATATTTCTTAA

Library	Parental gene expression (RPM)
SRP017611_liver	3 .64 RPM
SRP017611_kidney	4 .64 RPM
SRP017611_brain	5 .39 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000001342	ortholog_one2one	1 retrogene	retro_btau_1304,
Canis familiaris	ENSCAFG00000015904	ortholog_one2one	1 retrogene	retro_cfam_1744,
Choloepus hoffmanni	ENSCHOG00000011799	ortholog_one2one	9 retrogenes	retro_chof_112, retro_chof_1237, retro_chof_1314, retro_chof_1357, retro_chof_1938, retro_chof_243, retro_chof_67, retro_chof_809, retro_chof_896,
Callithrix jacchus	ENSCJAG00000000795	ortholog_one2many	2 retrogenes	retro_cjac_109, retro_cjac_7,
Dasypus novemcinctus	ENSDNOG00000010812	ortholog_one2one	2 retrogenes	retro_dnov_858, retro_dnov_954,
Equus caballus	ENSECAG00000018861	ortholog_one2many	1 retrogene	retro_ecab_30,
Erinaceus europaeus	ENSEEUG00000006755	ortholog_one2one	1 retrogene	retro_eeur_50,
Homo sapiens	ENSG00000137876	ortholog_one2one	17 retrogenes	retro_hsap_1049, retro_hsap_1125, retro_hsap_1355, retro_hsap_1635, retro_hsap_1829, retro_hsap_1887, retro_hsap_1941, retro_hsap_1963, retro_hsap_2268, retro_hsap_2467, retro_hsap_3378, retro_hsap_338, retro_hsap_3566, retro_hsap_3861, retro_hsap_4015, retro_hsap_4101, retro_hsap_894,
Gorilla gorilla	ENSGGOG00000005195	ortholog_one2many	15 retrogenes	retro_ggor_1055, retro_ggor_1081, retro_ggor_1151, retro_ggor_1194, retro_ggor_1235, retro_ggor_1412, retro_ggor_1536, retro_ggor_1688, retro_ggor_2286, retro_ggor_2406, retro_ggor_2600, retro_ggor_2697, retro_ggor_2754, retro_ggor_359, retro_ggor_879,
Microcebus murinus	ENSMICG00000002621	ortholog_one2one	3 retrogenes	retro_mmur_1378, retro_mmur_306, retro_mmur_952,
Myotis lucifugus	ENSMLUG00000011976	ortholog_one2one	4 retrogenes	retro_mluc_1415, retro_mluc_1512, retro_mluc_2173, retro_mluc_2320,
Macaca mulatta	ENSMMUG00000020693	ortholog_one2many	16 retrogenes	retro_mmul_1030, retro_mmul_1107, retro_mmul_1257, retro_mmul_1363, retro_mmul_1406, retro_mmul_1560, retro_mmul_1824, retro_mmul_1907, retro_mmul_2105, retro_mmul_2364, retro_mmul_322, retro_mmul_424, retro_mmul_582, retro_mmul_599, retro_mmul_817, retro_mmul_872,
Monodelphis domestica	ENSMODG00000007966	ortholog_one2one	1 retrogene	retro_mdom_825,
Mustela putorius furo	ENSMPUG00000002228	ortholog_one2one	1 retrogene	retro_mputfur_514,
Mus musculus	ENSMUSG00000032215	ortholog_one2one	1 retrogene	retro_mmus_1695,
Nomascus leucogenys	ENSNLEG00000006578	ortholog_one2one	16 retrogenes	retro_nleu_1289, retro_nleu_1321, retro_nleu_1392, retro_nleu_1468, retro_nleu_1779, retro_nleu_1809, retro_nleu_185, retro_nleu_2309, retro_nleu_2449, retro_nleu_2606, retro_nleu_2874, retro_nleu_2974, retro_nleu_386, retro_nleu_570, retro_nleu_919, retro_nleu_967,
Oryctolagus cuniculus	ENSOCUG00000007447	ortholog_one2one	2 retrogenes	retro_ocun_1108, retro_ocun_1899,
Otolemur garnettii	ENSOGAG00000010400	ortholog_one2one	15 retrogenes	retro_ogar_1135, retro_ogar_1320, retro_ogar_1433, retro_ogar_1539, retro_ogar_1876, retro_ogar_1947, retro_ogar_2088, retro_ogar_2171, retro_ogar_2579, retro_ogar_3029, retro_ogar_3154, retro_ogar_3174, retro_ogar_3239, retro_ogar_3445, retro_ogar_619,
Ochotona princeps	ENSOPRG00000013115	ortholog_one2one	4 retrogenes	retro_opri_1047, retro_opri_1226, retro_opri_66, retro_opri_777,
Pongo abelii	ENSPPYG00000006495	ortholog_one2one	19 retrogenes	retro_pabe_1123, retro_pabe_1350, retro_pabe_1499, retro_pabe_1568, retro_pabe_1602, retro_pabe_1614, retro_pabe_1623, retro_pabe_1726, retro_pabe_1819, retro_pabe_1873, retro_pabe_1949, retro_pabe_2774, retro_pabe_2939, retro_pabe_3046, retro_pabe_3297, retro_pabe_3359, retro_pabe_771, retro_pabe_875, retro_pabe_930,
Pan troglodytes	ENSPTRG00000007094	ortholog_one2one	16 retrogenes	retro_ptro_1103, retro_ptro_1164, retro_ptro_1268, retro_ptro_1296, retro_ptro_1311, retro_ptro_1426, retro_ptro_1607, retro_ptro_2422, retro_ptro_2631, retro_ptro_270, retro_ptro_2725, retro_ptro_2783, retro_ptro_617, retro_ptro_679, retro_ptro_715, retro_ptro_929,
Pteropus vampyrus	ENSPVAG00000004093	ortholog_one2one	3 retrogenes	retro_pvam_331, retro_pvam_619, retro_pvam_671,
Rattus norvegicus	ENSRNOG00000007630	ortholog_one2one	2 retrogenes	retro_rnor_1945, retro_rnor_506,
Sarcophilus harrisii	ENSSHAG00000011494	ortholog_one2one	1 retrogene	retro_shar_465,
Sus scrofa	ENSSSCG00000024983	ortholog_one2one	1 retrogene	retro_sscr_916,
Ictidomys tridecemlineatus	ENSSTOG00000009408	ortholog_one2many	6 retrogenes	retro_itri_100, retro_itri_1246, retro_itri_1388, retro_itri_1605, retro_itri_1699, retro_itri_1767,
Tupaia belangeri	ENSTBEG00000010750	ortholog_one2one	9 retrogenes	retro_tbel_1552, retro_tbel_2292, retro_tbel_3033, retro_tbel_4025, retro_tbel_4076, retro_tbel_4138, retro_tbel_4462, retro_tbel_4711, retro_tbel_720,
Tarsius syrichta	ENSTSYG00000001271	ortholog_one2one	1 retrogene	retro_tsyr_677,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_851	94.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000019272 retrocopies

Parental gene:	RSL24D1, ENSFCAG00000019272
Aliases:	None
Description:	ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:18479]
Organism:	*Cat (Felis catus)*
Coordinates:	B3:51245873..51261541(+)

Parental gene:

RSL24D1, ENSFCAG00000019272