RetrogeneDB ID: | retro_ptro_2725 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:4994245..4994503(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RSL24D1 | ||
Ensembl ID: | ENSPTRG00000007094 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.23 % |
Parental protein coverage: | 52.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLAGKGKQLE |
.PIKYQRELWNK..DAMKRVEEIKQK.QAKFIMNR.KKNKELQKV.DIKEVKQNIHL...PLAGK..Q.E | |
Retrocopy | KPIKYQRELWNKSMDAMKRVEEIKQKSQAKFIMNRWKKNKELQKV*DIKEVKQNIHLLQTPLAGKW*QVE |
Parental | EKMVQQLQEDVDMEDA |
.KMVQQLQ.DV..ED. | |
Retrocopy | DKMVQQLQKDVEIEDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 34 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .82 RPM |
SRP007412_heart | 0 .00 RPM | 41 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 38 .34 RPM |
SRP007412_liver | 0 .00 RPM | 35 .03 RPM |
SRP007412_testis | 0 .00 RPM | 51 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4015 |
Gorilla gorilla | retro_ggor_2697 |
Pongo abelii | retro_pabe_3297 |