RetrogeneDB ID: | retro_mmul_2364 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:104068544..104069027(-) | ||
Located in intron of: | ENSMMUG00000020995 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2503 | ||
Ensembl ID: | ENSMMUG00000020693 | ||
Aliases: | None | ||
Description: | probable ribosome biogenesis protein RLP24 [Source:RefSeq peptide;Acc:NP_001244991] |
Percent Identity: | 80. % |
Parental protein coverage: | 99.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFE |
M.I.KCYFCSGPIYPGHGMMF..N.CKVFRFCKSKCHKNFKKK.NP.KVR.TKAF.KAAGKELTV.NSFE | |
Retrocopy | MHIKKCYFCSGPIYPGHGMMFIHNNCKVFRFCKSKCHKNFKKKCNPHKVR*TKAFQKAAGKELTVYNSFE |
Parental | FEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ-KVQDIKEVKQNIHLIRAP-L |
FEKR.NEPIKYQ.ELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKEL..K....K.......L...P.L | |
Retrocopy | FEKRENEPIKYQ*ELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELR<KFRISKKLSKTSILSELP<L |
Parental | AGKGKQ-LEEKMVQQLQEDVDMEDA |
AGKGKQ..EEK.VQQLQEDVD.EDA | |
Retrocopy | AGKGKQ<VEEKIVQQLQEDVDVEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .87 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .64 RPM |
SRP007412_heart | 0 .00 RPM | 20 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .19 RPM |
SRP007412_liver | 0 .00 RPM | 7 .36 RPM |
SRP007412_testis | 0 .00 RPM | 10 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4101 |
Pan troglodytes | retro_ptro_2783 |
Pongo abelii | retro_pabe_3359 |