RetrogeneDB ID: | retro_hsap_346 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:15018624..15018909(-) | ||
Located in intron of: | ENSG00000189337 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235829 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TBCA | ||
Ensembl ID: | ENSG00000171530 | ||
Aliases: | None | ||
Description: | tubulin folding cofactor A [Source:HGNC Symbol;Acc:11579] |
Percent Identity: | 83.16 % |
Parental protein coverage: | 79.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SKFLRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE |
S...R.VKEK..Y.KEAK.QEEKIEKMRAEDGENY.IKKQAEILQES.MMIPDCQRRLEAAYLDLQ..LE | |
Retrocopy | SEVCRSVKEKLTYGKEAK*QEEKIEKMRAEDGENYAIKKQAEILQESQMMIPDCQRRLEAAYLDLQQMLE |
Parental | NEKDLEEAEEYKEARLVLDSVKLEA |
.EKDLE..EEYKEA.LVLDSVKLEA | |
Retrocopy | SEKDLEDTEEYKEAHLVLDSVKLEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 45 .42 RPM |
bodymap2_adrenal | 0 .00 RPM | 52 .65 RPM |
bodymap2_brain | 0 .14 RPM | 58 .83 RPM |
bodymap2_breast | 0 .00 RPM | 51 .83 RPM |
bodymap2_colon | 0 .00 RPM | 79 .16 RPM |
bodymap2_heart | 0 .00 RPM | 30 .98 RPM |
bodymap2_kidney | 0 .08 RPM | 94 .78 RPM |
bodymap2_liver | 0 .00 RPM | 60 .54 RPM |
bodymap2_lung | 0 .00 RPM | 49 .42 RPM |
bodymap2_lymph_node | 0 .00 RPM | 48 .99 RPM |
bodymap2_ovary | 0 .02 RPM | 75 .41 RPM |
bodymap2_prostate | 0 .00 RPM | 80 .92 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 37 .94 RPM |
bodymap2_testis | 0 .04 RPM | 72 .26 RPM |
bodymap2_thyroid | 0 .08 RPM | 67 .85 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 49 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_274 |
Callithrix jacchus | retro_cjac_2974 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014223 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000019848 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012187 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016572 | 1 retrocopy | |
Homo sapiens | ENSG00000171530 | 3 retrocopies |
retro_hsap_3065, retro_hsap_346 , retro_hsap_4667,
|
Macaca mulatta | ENSMMUG00000011853 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042043 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000010198 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002460 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015579 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017013 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048342 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009943 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |