RetrogeneDB ID: | retro_opri_879 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_4010:106194..106550(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TBCA | ||
Ensembl ID: | ENSOPRG00000002460 | ||
Aliases: | None | ||
Description: | tubulin folding cofactor A [Source:HGNC Symbol;Acc:11579] |
Percent Identity: | 74.17 % |
Parental protein coverage: | 87.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PAPAR-RGAGAMADPRVRQIKIKTG-VVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQ |
PAPAR.R..GAMADPRVRQIKIKT..V.KRLV....................KAEDGENYAIKKQAEILQ | |
Retrocopy | PAPARARRSGAMADPRVRQIKIKTA<VLKRLVXXXXXXXXXXXXXXXXXXXXKAEDGENYAIKKQAEILQ |
Parental | ESRMMIPDCQRRLEAAYADLQQ--ESEKDLEEAEEYKEARVVLDSVKLEA |
ESRMMIPDCQRRLEAAYA.LQQ..E.EKDLEEA.EYKEARVVLDSVKLEA | |
Retrocopy | ESRMMIPDCQRRLEAAYAYLQQVLEREKDLEEAKEYKEARVVLDSVKLEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014223 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000019848 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012187 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016572 | 1 retrocopy | |
Homo sapiens | ENSG00000171530 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011853 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042043 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000010198 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002460 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015579 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017013 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048342 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009943 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009840 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006034 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000514 | 1 retrocopy |