RetrogeneDB ID: | retro_ogar_3193 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873738.1:2117573..2117864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000025607 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TBCA | ||
Ensembl ID: | ENSOGAG00000010198 | ||
Aliases: | None | ||
Description: | tubulin folding cofactor A [Source:HGNC Symbol;Acc:11579] |
Percent Identity: | 80.41 % |
Parental protein coverage: | 87.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQTEILQESRMMIPDCQRRLEAAY |
.RQIKIKTG..K.LVKEKVMYEKE.KQQE.KIEK.RAE.GE..AIKKQ.EILQESRMMIPDCQ.RLEAAY | |
Retrocopy | LRQIKIKTGKLK*LVKEKVMYEKEGKQQEQKIEKVRAEYGEKCAIKKQIEILQESRMMIPDCQCRLEAAY |
Parental | IDLQQMLES--EKDLEEAEEYKEARLV |
IDLQQMLES.....LE.AEEYKEA.LV | |
Retrocopy | IDLQQMLESXXXXXLEKAEEYKEACLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014223 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000019848 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012187 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016572 | 1 retrocopy | |
Homo sapiens | ENSG00000171530 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011853 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042043 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000010198 | 1 retrocopy |
retro_ogar_3193 ,
|
Ochotona princeps | ENSOPRG00000002460 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015579 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017013 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048342 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009943 | 1 retrocopy |