RetrogeneDB ID: | retro_hsap_3494 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:88008672..88009550(+) | ||
Located in intron of: | ENSG00000164411 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000216990 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPD1 | ||
Ensembl ID: | ENSG00000144381 | ||
Aliases: | HSPD1, CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65, HuCHA60, SPG13 | ||
Description: | heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261] |
Percent Identity: | 77.03 % |
Parental protein coverage: | 51.48 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGAN |
.WGS.KVTKDGVTV.KSID.KDK.KNIG.KLVQDVANNTNEEAG...T.A.VL..S.AK.GFEKISK.AN | |
Retrocopy | NWGSSKVTKDGVTVPKSIDVKDKHKNIGVKLVQDVANNTNEEAGEAITSAIVLPCSFAKKGFEKISKSAN |
Parental | PVEIRRGVMLAVDAVIAELKKQSKP-VTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGK |
PVEIR..VMLAVD..IAELKK.S.P..TTP.EIAQVATISANGDKEI.NIISDA..K.GRKGV.TVKDGK | |
Retrocopy | PVEIR-SVMLAVDVIIAELKKLSEP<MTTPGEIAQVATISANGDKEIVNIISDA-NKFGRKGVLTVKDGK |
Parental | TLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIA |
TLNDELEII.G.KFD.GYISPYFINTSKG.KCEFQDAYV.L.E.KISS.Q..VPAL.IAN.H.K.LVIIA | |
Retrocopy | TLNDELEIIKGIKFD*GYISPYFINTSKG*KCEFQDAYVVLNEMKISSVQTTVPAL*IANPHCKSLVIIA |
Parental | EDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKV |
ED.D.EA.ST...NRLKVGLQ..AVKAP.FGDNRKNQ..D.AIATGG.VF.EEGL.LN.E...P..L.KV | |
Retrocopy | EDIDREARSTFIFNRLKVGLQIIAVKAPDFGDNRKNQREDTAIATGGLVFSEEGLALNFEAI*PRNLEKV |
Parental | GEVIVTKDDAMLLKGK |
GEVI.TK.DAMLLKGK | |
Retrocopy | GEVILTKYDAMLLKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 169 .50 RPM |
bodymap2_adrenal | 0 .12 RPM | 142 .79 RPM |
bodymap2_brain | 0 .16 RPM | 143 .10 RPM |
bodymap2_breast | 0 .00 RPM | 184 .30 RPM |
bodymap2_colon | 0 .00 RPM | 473 .77 RPM |
bodymap2_heart | 0 .09 RPM | 84 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 383 .99 RPM |
bodymap2_liver | 0 .00 RPM | 451 .41 RPM |
bodymap2_lung | 0 .00 RPM | 244 .20 RPM |
bodymap2_lymph_node | 0 .00 RPM | 301 .77 RPM |
bodymap2_ovary | 0 .00 RPM | 367 .40 RPM |
bodymap2_prostate | 0 .00 RPM | 232 .90 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 104 .58 RPM |
bodymap2_testis | 0 .02 RPM | 196 .47 RPM |
bodymap2_thyroid | 0 .09 RPM | 841 .36 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 121 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2361 |
Pongo abelii | retro_pabe_2887 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .08 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .12 RPM |
GBR_HG00134 | 0 .11 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .07 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .17 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .08 RPM |