Parental gene:

HSPD1, ENSG00000144381

Aliases:HSPD1, CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65, HuCHA60, SPG13
Description:heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261]
Organism:Human (Homo sapiens)
Coordinates:2:198351304..198381461(-)


>ENSG00000144381
ATGCTTCGGTTACCCACAGTCTTTCGCCAGATGAGACCGGTGTCCAGGGTACTGGCTCCTCATCTCACTCGGGCTTATGC
CAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTGGCCGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAGCAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTT
GCAAAGTCAATTGACTTAAAAGATAAATACAAAAACATTGGAGCTAAACTTGTTCAAGATGTTGCCAATAACACAAATGA
AGAAGCTGGGGATGGCACTACCACTGCTACTGTACTGGCACGCTCTATAGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG
GTGCTAATCCAGTGGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAAAAGCAGTCTAAA
CCTGTGACCACCCCTGAAGAAATTGCACAGGTTGCTACGATTTCTGCAAACGGAGACAAAGAAATTGGCAATATCATCTC
TGATGCAATGAAAAAAGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTAGAAATTA
TTGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTGAGTGAAAAGAAAATTTCTAGTATCCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCA
CCGTAAGCCTTTGGTCATAATCGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTCGTCTTGAATAGGCTAAAGGTTG
GTCTTCAGGTTGTGGCAGTCAAGGCTCCAGGGTTTGGTGACAATAGAAAGAACCAGCTTAAAGATATGGCTATTGCTACT
GGTGGTGCAGTGTTTGGAGAAGAGGGATTGACCCTGAATCTTGAAGACGTTCAGCCTCATGACTTAGGAAAAGTTGGAGA
GGTCATTGTGACCAAAGACGATGCCATGCTCTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAA
TCATTGAGCAGTTAGATGTCACAACTAGTGAATATGAAAAGGAAAAACTGAATGAACGGCTTGCAAAACTTTCAGATGGA
GTGGCTGTGCTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCCCTTAATGC
TACAAGAGCTGCTGTTGAAGAAGGCATTGTTTTGGGAGGGGGTTGTGCCCTCCTTCGATGCATTCCAGCCTTGGACTCAT
TGACTCCAGCTAATGAAGATCAAAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCAGCAATGACCATTGCT
AAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAGAAAATTATGCAAAGTTCCTCAGAAGTTGGTTATGATGCTATGGC
TGGAGATTTTGTGAATATGGTGGAAAAAGGAATCATTGACCCAACAAAGGTTGTGAGAACTGCTTTATTGGATGCTGCTG
GTGTGGCCTCTCTGTTAACTACAGCAGAAGTTGTAGTCACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCA
ATGGGTGGAATGGGAGGTGGTATGGGAGGTGGCATGTTCTAA

Library Parental gene expression (RPM)
bodymap2_adipose 169 .50 RPM
bodymap2_adrenal 142 .79 RPM
bodymap2_brain 143 .10 RPM
bodymap2_breast 184 .30 RPM
bodymap2_colon 473 .77 RPM
bodymap2_heart 84 .42 RPM
bodymap2_kidney 383 .99 RPM
bodymap2_liver 451 .41 RPM
bodymap2_lung 244 .20 RPM
bodymap2_lymph_node 301 .77 RPM
bodymap2_ovary 367 .40 RPM
bodymap2_prostate 232 .90 RPM
bodymap2_skeletal_muscle 104 .58 RPM
bodymap2_testis 196 .47 RPM
bodymap2_thyroid 841 .36 RPM
bodymap2_white_blood_cells 121 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 possible_ortholog 1 retrogene
retro_amel_771,
Canis familiaris ENSCAFG00000010865 possible_ortholog 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Callithrix jacchus ENSCJAG00000003990 ortholog_one2one 6 retrogenes
retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Gorilla gorilla ENSGGOG00000008267 ortholog_one2one 6 retrogenes
retro_ggor_1927, retro_ggor_2069, retro_ggor_2361, retro_ggor_2698, retro_ggor_800, retro_ggor_985,
Loxodonta africana ENSLAFG00000000053 possible_ortholog 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2one 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 possible_ortholog 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 ortholog_one2many 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2one 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 possible_ortholog 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Mus musculus ENSMUSG00000025980 ortholog_one2one 5 retrogenes
retro_mmus_1225, retro_mmus_2494, retro_mmus_3206, retro_mmus_439, retro_mmus_706,
Nomascus leucogenys ENSNLEG00000006874 ortholog_one2one 7 retrogenes
retro_nleu_1349, retro_nleu_2238, retro_nleu_229, retro_nleu_657, retro_nleu_675, retro_nleu_691, retro_nleu_787,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Pongo abelii ENSPPYG00000013046 ortholog_one2one 5 retrogenes
retro_pabe_2040, retro_pabe_2244, retro_pabe_2476, retro_pabe_2887, retro_pabe_848,
Rattus norvegicus ENSRNOG00000014525 ortholog_one2many 9 retrogenes
retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2one 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1006 94.10 100.00
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2. retro_hsap_2770 88.41 52.71
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3. retro_hsap_2987 90.06 87.26
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4. retro_hsap_3151 95.32 89.53
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5. retro_hsap_3494 77.03 51.48
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6. retro_hsap_3930 84.12 99.13
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7. retro_hsap_4018 84.99 99.13
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Download FASTA sequences of all ENSG00000144381 retrocopies