RetrogeneDB ID: | retro_mmus_2494 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:106136110..106137778(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081189 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspd1 | ||
Ensembl ID: | ENSMUSG00000025980 | ||
Aliases: | Hspd1, 60kDa, Hsp60 | ||
Description: | heat shock protein 1 (chaperonin) [Source:MGI Symbol;Acc:MGI:96242] |
Percent Identity: | 87.46 % |
Parental protein coverage: | 97.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MLRLPTVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGS |
ML.LPTVL.QMRPVS..LA.HLT.AYAKD.KF..DA.ALMLQGVDLLADAVAVTMGPKGR.VIIEQ.WGS | |
Retrocopy | ML*LPTVLHQMRPVSPELALHLTQAYAKDGKFDVDAGALMLQGVDLLADAVAVTMGPKGRAVIIEQNWGS |
Parental | PKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEI |
PKV.K.GVTV.KSIDLKDKYKNI.AKLVQDVANNTNEEAGDGTT.ATVLA.SIA.EGFEKISKGAN.VEI | |
Retrocopy | PKV-KNGVTVTKSIDLKDKYKNIRAKLVQDVANNTNEEAGDGTT-ATVLACSIANEGFEKISKGANSVEI |
Parental | RRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKGVITVKDGKTLNDE |
.RGVMLAVDAVIAELKK.SKP.TTPEEIAQVATISANG.K.IG.I..DA..KVGRKGVIT.KDGK.LNDE | |
Retrocopy | QRGVMLAVDAVIAELKK*SKPLTTPEEIAQVATISANGGKEIGDINTDAKTKVGRKGVITGKDGKSLNDE |
Parental | LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDG |
LEIIEGMK.DR.YIS.YFINTSKGQKCEFQ.AYVLLSEKKISS....VPALEIANAH.KPLVII.EDVDG | |
Retrocopy | LEIIEGMKLDREYISLYFINTSKGQKCEFQGAYVLLSEKKISSDWFTVPALEIANAHQKPLVIITEDVDG |
Parental | EALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIV |
EALSTLVLNR.KVG.QVVAVKAPGFGDNRK.QLKDMAIATGGAVF.EEGL.LNL.D.QAHDL.KV.EVI. | |
Retrocopy | EALSTLVLNRPKVGPQVVAVKAPGFGDNRKSQLKDMAIATGGAVFEEEGLKLNLKDAQAHDLRKVVEVIA |
Parental | TKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR |
TKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKL.ERLAKLSDGVAVLKVGGTSDVEVNE.KDR | |
Retrocopy | TKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLKERLAKLSDGVAVLKVGGTSDVEVNEEKDR |
Parental | VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLI |
VTD.LNATRAAVEEGIVLGGGCAL..CIPALDSLKPANEDQKIGIE.IKRALKIPAMTI.KNA..EGSLI | |
Retrocopy | VTDVLNATRAAVEEGIVLGGGCALRWCIPALDSLKPANEDQKIGIEVIKRALKIPAMTIVKNADAEGSLI |
Parental | VEKILQSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDPGM |
VE.ILQSSSEVGY.AMLGDFVN.VEKGIID..KVVRTALLD..GVA.LLTTAEAVVT.IPKEEKDPGM | |
Retrocopy | VEQILQSSSEVGYEAMLGDFVNTVEKGIIDLRKVVRTALLDVVGVAALLTTAEAVVTGIPKEEKDPGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 93 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 79 .33 RPM |
SRP007412_heart | 0 .19 RPM | 210 .75 RPM |
SRP007412_kidney | 0 .04 RPM | 298 .39 RPM |
SRP007412_liver | 0 .05 RPM | 313 .50 RPM |
SRP007412_testis | 0 .18 RPM | 22 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013770 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010865 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000003990 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000009184 | 4 retrocopies | |
Homo sapiens | ENSG00000144381 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000008267 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000000053 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011987 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000871 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000010489 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012289 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000007818 | 3 retrocopies | |
Mus musculus | ENSMUSG00000025980 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006874 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000034053 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000013046 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000014525 | 9 retrocopies | |
Xenopus tropicalis | ENSXETG00000007509 | 1 retrocopy |