RetrogeneDB ID: | retro_mmus_1225 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:101343897..101345232(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspd1 | ||
Ensembl ID: | ENSMUSG00000025980 | ||
Aliases: | Hspd1, 60kDa, Hsp60 | ||
Description: | heat shock protein 1 (chaperonin) [Source:MGI Symbol;Acc:MGI:96242] |
Percent Identity: | 84.04 % |
Parental protein coverage: | 77.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | FEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKDIGNIISDAMKKVGRKG |
F.KISKG.NPVEI.RGVMLA..A.IAELKK..KPV..PEEIAQVA.ISANGDKDIGNIISDAMKK.GRKG | |
Retrocopy | FGKISKGVNPVEIQRGVMLAANAAIAELKK*FKPVIIPEEIAQVASISANGDKDIGNIISDAMKKAGRKG |
Parental | VITVKDGKT-LNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANA |
.ITVKDGKT.LNDELEI..G.KFDRGYISPYFINTSKGQ..EFQDAYVLL.EKKISSVQSIVPALEIAN. | |
Retrocopy | AITVKDGKT>LNDELEITDGVKFDRGYISPYFINTSKGQNYEFQDAYVLLNEKKISSVQSIVPALEIANV |
Parental | HRKPLVIIAEDVDGEALSTLV-LNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLE |
H..PL.I.AE.VDGEALS.LV.LNRLKVGLQVVA.KAPGFGDNRKNQLKDMAIATGG.VFGEEGLNLNLE | |
Retrocopy | HGSPLIIMAE*VDGEALSILV<LNRLKVGLQVVAIKAPGFGDNRKNQLKDMAIATGGVVFGEEGLNLNLE |
Parental | DVQAH-DLGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVL |
DVQA..DLGKV.EVIVTKDDAMLLKGK.DKAH.EKR.Q.ITE.LDITT..YEKEKL.ERLAK.SDGVAVL | |
Retrocopy | DVQAK<DLGKVVEVIVTKDDAMLLKGKADKAHTEKRTQKITEHLDITTGDYEKEKLDERLAKVSDGVAVL |
Parental | KVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIK-RALK |
KVGGTSDVEV.EKK...T..L.ATRAAVEEGIVLG.GCALLRCIPALDSL.PANEDQKIGIEII...ALK | |
Retrocopy | KVGGTSDVEVTEKKELQTVSLKATRAAVEEGIVLGRGCALLRCIPALDSLNPANEDQKIGIEIIL<KALK |
Parental | IPAMTIAKNAGVEGSLIVEKILQSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAE |
IPAM.IAKN.GV.GSLIVEKILQSSSEVG...MLGDFVNMVE.GIIDPTKVVRTALLDAAGV.SLL.T.. | |
Retrocopy | IPAMMIAKNTGVGGSLIVEKILQSSSEVGCGTMLGDFVNMVENGIIDPTKVVRTALLDAAGVTSLLSTTK |
Parental | AVVTEIPKEEKDPGMGAMGGMGG-GMGGGMF |
AV.TEIPKEEKDPGM.AM...GG..MGGGMF | |
Retrocopy | AVKTEIPKEEKDPGMSAMDEIGG<TMGGGMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 93 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 79 .33 RPM |
SRP007412_heart | 0 .09 RPM | 210 .75 RPM |
SRP007412_kidney | 0 .04 RPM | 298 .39 RPM |
SRP007412_liver | 0 .11 RPM | 313 .50 RPM |
SRP007412_testis | 0 .00 RPM | 22 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013770 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010865 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000003990 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000009184 | 4 retrocopies | |
Homo sapiens | ENSG00000144381 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000008267 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000000053 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011987 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000000871 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000010489 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012289 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000007818 | 3 retrocopies | |
Mus musculus | ENSMUSG00000025980 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006874 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000034053 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000013046 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000014525 | 9 retrocopies | |
Xenopus tropicalis | ENSXETG00000007509 | 1 retrocopy |