RetrogeneDB ID: | retro_hsap_3632 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:92525560..92526131(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000219867 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSG00000067560 | ||
Aliases: | RHOA, ARH12, ARHA, RHO12, RHOH12 | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 75.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGK-QVELALWDTAGQEDYDRL |
M....KKLVIVGD..CGKTCLLIVFSKDQFPE...P..F.NYVA.IEVDGK..VEL.LWDTA.QED.DRL | |
Retrocopy | MVPVQKKLVIVGDRVCGKTCLLIVFSKDQFPEG*APSGFQNYVAHIEVDGK<SVELTLWDTARQED*DRL |
Parental | RPLSYPDTDVILMC-FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP |
RPL.Y.DTDV..MC.FS.D.P.SLENIPEKW.PEVKHFCPNVP..LVGNKKDLRND.HTR.ELA.MKQ.. | |
Retrocopy | RPLFYSDTDV--MC<FSVDNPESLENIPEKWSPEVKHFCPNVPTSLVGNKKDLRNDVHTRWELARMKQKR |
Parental | VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL |
V..EEGRDM...IG..GYM.CSAKTKDGVREVFE.A..A.LQAR.GKK.SGCLVL | |
Retrocopy | VRLEEGRDMVKGIGSLGYMKCSAKTKDGVREVFEVAAKATLQARCGKKNSGCLVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 757 .45 RPM |
bodymap2_adrenal | 0 .00 RPM | 649 .43 RPM |
bodymap2_brain | 0 .00 RPM | 361 .28 RPM |
bodymap2_breast | 0 .00 RPM | 744 .74 RPM |
bodymap2_colon | 0 .00 RPM | 587 .60 RPM |
bodymap2_heart | 0 .00 RPM | 237 .02 RPM |
bodymap2_kidney | 0 .00 RPM | 493 .85 RPM |
bodymap2_liver | 0 .00 RPM | 198 .94 RPM |
bodymap2_lung | 0 .00 RPM | 799 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 569 .64 RPM |
bodymap2_ovary | 0 .00 RPM | 636 .81 RPM |
bodymap2_prostate | 0 .00 RPM | 587 .31 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 593 .82 RPM |
bodymap2_testis | 0 .11 RPM | 544 .03 RPM |
bodymap2_thyroid | 0 .00 RPM | 519 .31 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1068 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2456 |
Gorilla gorilla | retro_ggor_2450 |
Pongo abelii | retro_pabe_2979 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |