RetrogeneDB ID: | retro_acar_41 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:155258629..155259223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000010665 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSACAG00000008297 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.71 % |
Parental protein coverage: | 97.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP |
AAIRKKLV.VGDGACGKTCLLIVFSKD.FPEVYVPTVFENYVADIEVDGKQV.LALWDTAGQEDYDRLRP | |
Retrocopy | AAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVQLALWDTAGQEDYDRLRP |
Parental | LSYPDTDVILMCFSTDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKP |
LSYPDTDVILMCFS.DSPDSLENIPEKW.PEVKHFCPNVPIILV.NKKDLR.DEH.R.ELA.MKQEPV.. | |
Retrocopy | LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRHDEHVRAELARMKQEPVRA |
Parental | EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGC |
E.GR.MA.RI.A..Y.ECSAKTK.GVREVFE.ATRAALQ.R.G....GC | |
Retrocopy | EDGRAMALRIQAYDYLECSAKTKEGVREVFETATRAALQKRHG-AQGGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 14 .87 RPM | 318 .01 RPM |
SRP009831_brain | 18 .23 RPM | 139 .37 RPM |
SRP009831_dewlap | 3 .59 RPM | 137 .32 RPM |
SRP009831_embryo | 38 .62 RPM | 288 .94 RPM |
SRP009831_heart | 10 .53 RPM | 70 .87 RPM |
SRP009831_liver | 59 .27 RPM | 145 .08 RPM |
SRP009831_lung | 31 .53 RPM | 109 .16 RPM |
SRP009831_ovary | 3 .20 RPM | 125 .44 RPM |
SRP009831_skeletal_muscle | 1 .82 RPM | 21 .56 RPM |