RetrogeneDB ID: | retro_mmus_3966 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | Y:3804123..3804654(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rhoa | ||
Ensembl ID: | ENSMUSG00000007815 | ||
Aliases: | Rhoa, Arha, Arha1, Arha2 | ||
Description: | ras homolog gene family, member A [Source:MGI Symbol;Acc:MGI:1096342] |
Percent Identity: | 80.79 % |
Parental protein coverage: | 91.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID |
KTCLLIV.SKDQFPEVYVPTV.ENYVADIEVDGKQVELALWDTAGQ.DYD.LRPLSY.DTDVILMCFSID | |
Retrocopy | KTCLLIVLSKDQFPEVYVPTVYENYVADIEVDGKQVELALWDTAGQGDYDCLRPLSYADTDVILMCFSID |
Parental | SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYM |
S.D.LENIPEKWTPEVKHFCPNV.IILV.N.KDL.N.EHTR.EL.K.KQE.VKP..GRDMA.RIG.FGYM | |
Retrocopy | STDTLENIPEKWTPEVKHFCPNVTIILVANRKDLWNEEHTRQELVKLKQELVKPNKGRDMASRIGTFGYM |
Parental | ECSAKT-KDGVREVFEMATRAALQARRGKKKSGCLIL |
.CS..T..DG.REV...A.RA.LQARR.K.KSGCLI. | |
Retrocopy | VCSTRTPSDGGREVLQIARRAPLQARREKNKSGCLIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 70 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 75 .81 RPM |
SRP007412_heart | 0 .00 RPM | 107 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 148 .01 RPM |
SRP007412_liver | 0 .00 RPM | 83 .76 RPM |
SRP007412_testis | 0 .00 RPM | 31 .97 RPM |