RetrogeneDB ID: | retro_ggal_5 | ||
Retrocopylocation | Organism: | Chicken (Gallus gallus) | |
Coordinates: | 3:101365791..101366382(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGALG00000016485 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRHOA | ||
Ensembl ID: | ENSGALG00000003806 | ||
Aliases: | None | ||
Description: | transforming protein RhoA [Source:RefSeq peptide;Acc:NP_990035] |
Percent Identity: | 86.39 % |
Parental protein coverage: | 98.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAIRKKLV.VGDGACGKTCLLIVFSKD.FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR | |
Retrocopy | MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK |
PLSYPDTDVILMCFS.DSPDSLENIPEKW.PEVKHFCPNVPIILV.NKKDLRNDEH.R.ELA.MKQEPV. | |
Retrocopy | PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRNDEHVRNELARMKQEPVR |
Parental | PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCL |
.E.GR.MA.RI.A..Y.ECSAKTK.GVREVFE.ATRAALQ.R.G....GC. | |
Retrocopy | TEDGRAMAIRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG-TQNGCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 76 .67 RPM | 217 .61 RPM |
SRP007412_cerebellum | 39 .17 RPM | 214 .29 RPM |
SRP007412_heart | 12 .62 RPM | 178 .58 RPM |
SRP007412_kidney | 9 .73 RPM | 480 .88 RPM |
SRP007412_liver | 23 .08 RPM | 267 .41 RPM |
SRP007412_testis | 19 .67 RPM | 187 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Meleagris gallopavo | retro_mgal_2 |
Taeniopygia guttata | retro_tgut_11 |