RetrogeneDB ID: | retro_rnor_408 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:161616971..161617553(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000042954 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rhoa | ||
Ensembl ID: | ENSRNOG00000050519 | ||
Aliases: | Rhoa, Arha, Arha2 | ||
Description: | Transforming protein RhoA [Source:UniProtKB/Swiss-Prot;Acc:P61589] |
Percent Identity: | 85.42 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFP.VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR | |
Retrocopy | MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR |
Parental | PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVK |
PLSYPDTDV.L.CFSI..PDS..NIP.KW.PEVKHFCPNVPIILVG.KKDLRND..T..ELAK.KQEPVK | |
Retrocopy | PLSYPDTDVLLICFSIGNPDSFGNIPHKWIPEVKHFCPNVPIILVGSKKDLRNDLNTIQELAKRKQEPVK |
Parental | PEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLI |
PE.GRD.AN.IGAF.Y.ECSAKTKDGVR.VFE.ATRAALQ..R.KKK.GC.. | |
Retrocopy | PEQGRDLANSIGAFEYVECSAKTKDGVRKVFEKATRAALQTNRVKKKTGCFV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 160 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 341 .30 RPM |
SRP017611_liver | 0 .00 RPM | 124 .12 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_191 |