RetrogeneDB ID: | retro_itri_1068 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393367.1:224520..224837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.71 % |
Parental protein coverage: | 86.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAPAKKGGEKKKGRSAINEVVTREY-TINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR-IDTRL |
MA..KKG....K..S.I.EVVT.E..TI.IHK..HG.G..K..PRALKEI.KFA.KEMG.PDV...DTRL | |
Retrocopy | MALTKKGS---KSCSPIIEVVTTEL>TIHIHKCSHGEGLDKHSPRALKEIWKFARKEMGAPDVL>VDTRL |
Parental | NKAVWAKGIRNVPYRIRVRLSRKRNEDE-DSPNKL-YTLVTY |
..A..AKGI..VPY.....LSRK.NEDE..SPNKL...LVTY | |
Retrocopy | HRAL*AKGIWTVPYPTHIGLSRKTNEDE>GSPNKL<LRLVTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |