RetrogeneDB ID: | retro_itri_1142 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393384.1:2321837..2322160(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000010902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.91 % |
Parental protein coverage: | 88.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KGGEKKKG-RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAM-KEMGTPDVRIDTRLNKAVW |
..GEKKKG.RSAIN.V........I.K.IHGVG.....P.A.K........KEMGT..V.I..R..K.V. | |
Retrocopy | QNGEKKKG<RSAIN*VSSKYTSFDIYKCIHGVGLMEGTPSAPKSHGEMSQ<KEMGTSEVGI--RISKVVE |
Parental | AK-GIRNVPYRIRVRLSRK-RNEDEDSPNKLYTLVTYVPVTTFKN |
AK.GIR.VPY.I.V.LSRK..NEDEDS.NK...LVT.VP..TFK. | |
Retrocopy | AK<GIRDVPYGIHVPLSRK<NNEDEDSLNKR*NLVTNVPIRTFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |