RetrogeneDB ID: | retro_ogar_1057 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873534.1:23340265..23341215(-) | ||
Located in intron of: | ENSOGAG00000009507 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000007839 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.56 % |
Parental protein coverage: | 81.07 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | DGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSS |
DGKAIKV.QAT..SFE...RGPPPPP.SRG.PP.GLRGGRGGS.GTRG.PS..GH.DDG.YSMNFNMSSS | |
Retrocopy | DGKAIKVGQATELSFENNTRGPPPPPSSRG<PPKGLRGGRGGSRGTRGNPS*EGHKDDGDYSMNFNMSSS |
Parental | RGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG |
RGPLPVKRGP...S.GPPPKRS.PSGPV.SSSGMGGRAP.S..RDSY.G.P.REPLPS.RD.YLSPRDDG | |
Retrocopy | RGPLPVKRGPLLQS*GPPPKRSTPSGPVCSSSGMGGRAPASHRRDSYRGSPQREPLPSHRDIYLSPRDDG |
Parental | YSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD |
YSTKDS.SSRDYP.S.DTRDY.PP.RDYTY.DYGHSSS..DY.SRGY.DRDGYG...DYSDHPSGGS.R. | |
Retrocopy | YSTKDS*SSRDYPNSQDTRDYVPPLRDYTYHDYGHSSSCADYLSRGYRDRDGYGCAHDYSDHPSGGS*RL |
Parental | SYESYGNSRSAPPT-RGPPPSYGG-SSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP |
..ES...S.S.PPT..GP.PSYGG..SRY.DYSSS.DGYGG..DSYSS..SDL.SSG.D.VGRQ.RGLPP | |
Retrocopy | I*ESW*YSHSTPPT>QGPLPSYGG<NSRYYDYSSSDDGYGGNQDSYSSN*SDLCSSGHDGVGRQDRGLPP |
Parental | SMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY |
SMERGYPP.RDSYSSSS..AP..GG..GS.SDRGGG.SRY | |
Retrocopy | SMERGYPPLRDSYSSSSCRAPTAGGHRGS*SDRGGGKSRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018962 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012369 | 3 retrocopies | |
Felis catus | ENSFCAG00000004779 | 1 retrocopy | |
Homo sapiens | ENSG00000147274 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000006944 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005568 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000006856 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013209 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000001855 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031134 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007220 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007839 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009733 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000020771 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000866 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006211 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001154 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009555 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007322 | 1 retrocopy |