RetrogeneDB ID: | retro_etel_1952 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_319417:108749..109368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000013178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.3 % |
Parental protein coverage: | 52.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 10 |
Parental | GRAPVSRGRDSYG-GPPRREPLPSR-RDVYLSPRDDGYSTKDSYSSRDYPSSRDARDYAP-PPRDYTYRD |
GRAP.SRGRDSY..G.P.REPLPS..RDVYLSP.DD.YSTKD.Y.SR.YPSS.D.RDYAP.PP.DYTYRD | |
Retrocopy | GRAPGSRGRDSYW<GSP*REPLPSP<RDVYLSPIDDEYSTKDHYLSRHYPSSCDIRDYAP<PPGDYTYRD |
Parental | YGHSSSRDEYPSRGYSDRDGYGRDR-DYS-DHPSGGSYRDSYESYGNSRSAPPTRGP-PPSYG-GSSRYD |
YG..SSRD.YPSRGYSDRDGYGRD..DYS..HPSGGS..D.....G..R.APP..GP..PS.G.GSS..D | |
Retrocopy | YGDPSSRDRYPSRGYSDRDGYGRDQ<DYS<NHPSGGSHSDFSARSGRARTAPPWPGP<LPSEG<GSSHSD |
Parental | D-YSSSRDGYGGSRDSYSSSRSDLYSSGRDRV--GRQERGLP-PSMERGYPPPRDSYS-SS-SRGATRGG |
D..SSS.D..G.SRDS.SSS.S.L.S...D.V.......G.P.P.ME.GYP.P.DSYS.SS.S.GA.R.. | |
Retrocopy | D<CSSSQDRSGESRDSFSSSQSVLSSRDCDLVLWADKKQGFP<PLMETGYPLPCDSYS>SSSSHGAPRNV |
Parental | GRGGSRSDR |
GRGG..SDR | |
Retrocopy | GRGGNQSDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |