RetrogeneDB ID:

retro_meug_787

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold1885:50205..50622(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2D3
Ensembl ID:ENSMEUG00000004256
Aliases:None
Description:ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]


Retrocopy-Parental alignment summary:






>retro_meug_787
GAACTTAGCGATTTGGCCCGTGATCCTCCAGCACAGTGTTCTGCAGGTCCAGTTGGGGATGATATGTTTCATTGGCAAGC
CACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTTTGACAATTCATTTCCCTACAGACTACCCCT
TCAAACCACCCAAGGTTGCATTTACAACAAGAATTTATCATCCAAACATTAACAGTAATGGCAGCATTTGTCTCGATATT
CTAAGATCACAATGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCC
AGATGACCCCTTAGTGCCAGAGATTGCACGGATCTATAAAACAGGCAGAGACAAGTACAACAGAATATCTCGAGAATGGA
CTCAGAAGTATGCCATG

ORF - retro_meug_787 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.84 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGSVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI
ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQG.VFFLTIHFPTDYPFKPPKVAFTTRIYHPNI
RetrocopyELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI
ParentalNSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAV
NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT.RDKYNRISREWTQKYA.
RetrocopyNSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTGRDKYNRISREWTQKYAM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_787 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_787 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000046492 retrocopies
Ciona intestinalis ENSCING000000187112 retrocopies
Callithrix jacchus ENSCJAG000000154923 retrocopies
Ciona savignyi ENSCSAVG000000061361 retrocopy
Dipodomys ordii ENSDORG000000067622 retrocopies
Equus caballus ENSECAG000000206781 retrocopy
Erinaceus europaeus ENSEEUG000000146583 retrocopies
Echinops telfairi ENSETEG000000012913 retrocopies
Gorilla gorilla ENSGGOG000000013682 retrocopies
Gorilla gorilla ENSGGOG000000108321 retrocopy
Macropus eugenii ENSMEUG00000004256 6 retrocopies
Macropus eugenii ENSMEUG000000072381 retrocopy
Macropus eugenii ENSMEUG000000145171 retrocopy
Ornithorhynchus anatinus ENSOANG000000054151 retrocopy
Pongo abelii ENSPPYG000000149671 retrocopy
Pteropus vampyrus ENSPVAG000000154381 retrocopy
Sus scrofa ENSSSCG000000243061 retrocopy
Sus scrofa ENSSSCG000000298224 retrocopies
Tupaia belangeri ENSTBEG000000002705 retrocopies



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