RetrogeneDB ID:

retro_mmur_1483

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_67917:3987..4579(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PHB
Ensembl ID:ENSMICG00000006966
Aliases:None
Description:prohibitin [Source:HGNC Symbol;Acc:8912]


Retrocopy-Parental alignment summary:






>retro_mmur_1483
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTCGGCCTGGCCTTGGCCGTTGCAGGAGGCGTGGTGAACTCTGCCTT
GTATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTGCAGGACATTGTGGTAGGGGAAGGGA
CTCACTTTCTCATCCCATGGGTACAGAAACCAATTATCTTTGACTGCCGCTCTCGACCGCGTAACGTGCCAGTCATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCACGCTGTGCATCCTCTTCCAGCCTGTGGCTAGCCAGCTCCCGCGCATCTT
CACCAGCATCGGAGAGGACTACGACGAGCGCGTGCTGCCGTCCATCACTACAGAGATCCTCAAGTCAGTGGTGGCTCGCT
TTGATGCAGGGGAACTAATCACCCAGAGAGAGCTGGTCTCCAGGCAGGTGAGCGATGACCTTACGGAGCGAGCAGCAACC
TTCGGGCTCATCCTGGACGATGTCTCCTTGACGCATCTGACCTTTGGGAAGAGTTCACAGAAGCGGTGAAGCCAAACAGG
TGCTCAGCAGAGCAGAGAGGGCCAGATTCGTG

ORF - retro_mmur_1483 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.02 %
Parental protein coverage: 72.89 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
RetrocopyMAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR
ParentalSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
SRPRNVPVITGSKDLQNVNITL.ILF.PVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
RetrocopySRPRNVPVITGSKDLQNVNITLCILFQPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI
ParentalTQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGK-EFTEAV-EAKQVAQQEAERARFV
TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGK.EFTEAV.EAKQV....AERARFV
RetrocopyTQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGK<EFTEAV<EAKQVLSR-AERARFV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1483 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1483 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 120 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000047971 retrocopy
Choloepus hoffmanni ENSCHOG000000075882 retrocopies
Callithrix jacchus ENSCJAG0000000717422 retrocopies
Erinaceus europaeus ENSEEUG000000064813 retrocopies
Homo sapiens ENSG0000016708515 retrocopies
Gorilla gorilla ENSGGOG0000002800212 retrocopies
Macropus eugenii ENSMEUG000000051221 retrocopy
Microcebus murinus ENSMICG00000006966 9 retrocopies
Myotis lucifugus ENSMLUG000000082032 retrocopies
Macaca mulatta ENSMMUG0000000015613 retrocopies
Monodelphis domestica ENSMODG000000122101 retrocopy
Oryctolagus cuniculus ENSOCUG000000072091 retrocopy
Otolemur garnettii ENSOGAG000000270151 retrocopy
Ochotona princeps ENSOPRG000000008682 retrocopies
Procavia capensis ENSPCAG000000088511 retrocopy
Pan troglodytes ENSPTRG0000000937614 retrocopies
Rattus norvegicus ENSRNOG0000004679918 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000199292 retrocopies



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