RetrogeneDB ID: | retro_hsap_3868 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:72602008..72602550(-) | ||
Located in intron of: | ENSG00000233369 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233523 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSG00000167085 | ||
Aliases: | PHB, HEL-215, HEL-S-54e, PHB1 | ||
Description: | prohibitin [Source:HGNC Symbol;Acc:8912] |
Percent Identity: | 61.9 % |
Parental protein coverage: | 68.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDL-TE |
V.ITL..LF.P.....P.IF....E.....VLPSIT.E.LK...A..DAGELITQ.EL.SRQVS..L..E | |
Retrocopy | VTITLGVLFPPCCWPGPCIFQLL-EKPMKNVLPSITAELLKLGAAQADAGELITQGELGSRQVSN*L<SE |
Parental | RAATFGLILDDVSLTHLTFGKEFTEAVE-AKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIA |
.AATFG..LD.V.L..LTFGKEF.EAVE..K.VAQQE.ERAR.VV..AEQQK.AAIISAEGDSKA.E.IA | |
Retrocopy | QAATFGFLLDAVTLD-LTFGKEFAEAVE<TKEVAQQEEERARSVVARAEQQKTAAIISAEGDSKATEFIA |
Parental | NSLATAGDGLI-ELRKLEAAEDIAYQLSRSRN-ITYLPAGQSVLLQLPQ |
.S.ATAGDGLI....KLE......Y..S.S.N....LP.G.SVLLQLPQ | |
Retrocopy | SSVATAGDGLI<QAHKLEPWRTL-YRPSSSQN<LIHLPVGTSVLLQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 39 .46 RPM |
bodymap2_adrenal | 0 .00 RPM | 52 .03 RPM |
bodymap2_brain | 0 .00 RPM | 22 .36 RPM |
bodymap2_breast | 0 .00 RPM | 45 .64 RPM |
bodymap2_colon | 0 .00 RPM | 47 .41 RPM |
bodymap2_heart | 0 .00 RPM | 35 .91 RPM |
bodymap2_kidney | 0 .00 RPM | 68 .45 RPM |
bodymap2_liver | 0 .00 RPM | 35 .78 RPM |
bodymap2_lung | 0 .00 RPM | 25 .91 RPM |
bodymap2_lymph_node | 0 .00 RPM | 30 .64 RPM |
bodymap2_ovary | 0 .00 RPM | 45 .03 RPM |
bodymap2_prostate | 0 .00 RPM | 46 .63 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .39 RPM |
bodymap2_testis | 0 .00 RPM | 34 .60 RPM |
bodymap2_thyroid | 0 .00 RPM | 65 .33 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 25 .44 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |