Parental gene:

PHB, ENSPTRG00000009376

Aliases:None
Description:Pan troglodytes prohibitin (PHB), mRNA. [Source:RefSeq mRNA;Acc:NM_001246403]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:8230930..8241768(+)


>ENSPTRG00000009376
ATGGCTGCCAAAGTGTTTGAGTCCATTGGCAAGTTTGGCCTGGCCTTAGCTGTTGCAGGAGGCGTGGTGAACTCTGCCTT
ATATAATGTGGATGCTGGGCACAGAGCTGTCATCTTTGACCGATTCCGTGGAGTGCAGGACATTGTGGTAGGGGAAGGGA
CTCATTTTCTCATCCCATGGGTACAGAAACCAATTATCTTTGACTGCCGTTCTCGACCACGTAATGTGCCAGTCATCACT
GGTAGCAAAGATTTACAGAATGTCAACATCACACTGCGCATCCTCTTCCGGCCTGTCGCCAGCCAGCTTCCTCGCATCTT
CACCAGCATCGGAGAGGACTATGATGAGCGTGTGCTGCCGTCCATCACAACTGAGATCCTCAAGTCAGTGGTGGCTCGCT
TTGATGCTGGAGAACTAATCACCCAGAGAGAGCTGGTCTCCAGGCAGGTGAGCGACGACCTTACGGAGCGAGCCGCCACC
TTTGGGCTCATCCTGGATGACGTGTCCTTGACACATCTGACCTTCGGGAAGGAGTTCACAGAAGCGGTGGAAGCCAAACA
GGTGGCTCAGCAGGAAGCAGAGAGGGCCAGATTTGTGGTGGAAAAGGCTGAGCAACAGAAAAAGGCGGCCATCATCTCTG
CTGAGGGCGACTCCAAGGCAGCTGAGCTGATTGCCAACTCACTGGCCACTGCAGGGGATGGCCTGATCGAGCTGCGCAAG
CTGGAAGCTGCAGAGGACATCGCGTACCAGCTCTCACGCTCTCGGAACATCACCTACCTGCCAGCGGGGCAGTCCGTGCT
CCTCCAGCTGCCCCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 74 .79 RPM
SRP007412_cerebellum 61 .05 RPM
SRP007412_heart 103 .00 RPM
SRP007412_kidney 261 .10 RPM
SRP007412_liver 155 .59 RPM
SRP007412_testis 42 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004797 ortholog_one2one 1 retrogene
retro_acar_49,
Ailuropoda melanoleuca ENSAMEG00000012364 ortholog_one2one 1 retrogene
retro_amel_258,
Bos taurus ENSBTAG00000017120 ortholog_one2one 1 retrogene
retro_btau_481,
Canis familiaris ENSCAFG00000016926 ortholog_one2many 1 retrogene
retro_cfam_202,
Choloepus hoffmanni ENSCHOG00000007588 possible_ortholog 2 retrogenes
retro_chof_1159, retro_chof_2193,
Callithrix jacchus ENSCJAG00000007174 ortholog_one2many 22 retrogenes
retro_cjac_1048, retro_cjac_1403, retro_cjac_1683, retro_cjac_1761, retro_cjac_1820, retro_cjac_2261, retro_cjac_2389, retro_cjac_2390, retro_cjac_2391, retro_cjac_2445, retro_cjac_2523, retro_cjac_2659, retro_cjac_2663, retro_cjac_2909, retro_cjac_4205, retro_cjac_570, retro_cjac_635, retro_cjac_662, retro_cjac_872, retro_cjac_937, retro_cjac_966, retro_cjac_980,
Erinaceus europaeus ENSEEUG00000006481 ortholog_one2one 3 retrogenes
retro_eeur_219, retro_eeur_285, retro_eeur_369,
Homo sapiens ENSG00000167085 ortholog_one2one 15 retrogenes
retro_hsap_1113, retro_hsap_1514, retro_hsap_161, retro_hsap_1640, retro_hsap_2170, retro_hsap_2692, retro_hsap_3534, retro_hsap_3750, retro_hsap_3868, retro_hsap_3869, retro_hsap_4186, retro_hsap_4888, retro_hsap_517, retro_hsap_617, retro_hsap_776,
Gorilla gorilla ENSGGOG00000028002 possible_ortholog 12 retrogenes
retro_ggor_124, retro_ggor_1722, retro_ggor_1876, retro_ggor_238, retro_ggor_2387, retro_ggor_246, retro_ggor_2607, retro_ggor_3053, retro_ggor_476, retro_ggor_643, retro_ggor_741, retro_ggor_870,
Macropus eugenii ENSMEUG00000005122 ortholog_one2one 1 retrogene
retro_meug_708,
Microcebus murinus ENSMICG00000006966 ortholog_one2one 9 retrogenes
retro_mmur_1097, retro_mmur_1297, retro_mmur_1374, retro_mmur_1426, retro_mmur_1483, retro_mmur_1537, retro_mmur_1626, retro_mmur_62, retro_mmur_881,
Myotis lucifugus ENSMLUG00000008203 ortholog_one2many 2 retrogenes
retro_mluc_116, retro_mluc_2190,
Macaca mulatta ENSMMUG00000000156 ortholog_one2many 13 retrogenes
retro_mmul_1096, retro_mmul_1119, retro_mmul_1165, retro_mmul_1425, retro_mmul_151, retro_mmul_1565, retro_mmul_2148, retro_mmul_2420, retro_mmul_426, retro_mmul_521, retro_mmul_834, retro_mmul_866, retro_mmul_933,
Monodelphis domestica ENSMODG00000012210 ortholog_one2one 1 retrogene
retro_mdom_812,
Nomascus leucogenys ENSNLEG00000002978 ortholog_one2one 13 retrogenes
retro_nleu_1190, retro_nleu_1254, retro_nleu_1326, retro_nleu_1557, retro_nleu_1755, retro_nleu_1796, retro_nleu_1874, retro_nleu_191, retro_nleu_195, retro_nleu_2547, retro_nleu_2573, retro_nleu_402, retro_nleu_444,
Oryctolagus cuniculus ENSOCUG00000007209 ortholog_one2one 1 retrogene
retro_ocun_579,
Otolemur garnettii ENSOGAG00000027015 possible_ortholog 1 retrogene
retro_ogar_968,
Ochotona princeps ENSOPRG00000000868 ortholog_one2one 2 retrogenes
retro_opri_180, retro_opri_734,
Procavia capensis ENSPCAG00000008851 ortholog_one2one 1 retrogene
retro_pcap_74,
Pongo abelii ENSPPYG00000008920 ortholog_one2one 16 retrogenes
retro_pabe_1262, retro_pabe_1357, retro_pabe_1409, retro_pabe_1770, retro_pabe_2291, retro_pabe_289, retro_pabe_3030, retro_pabe_3034, retro_pabe_3426, retro_pabe_3427, retro_pabe_3800, retro_pabe_552, retro_pabe_753, retro_pabe_922, retro_pabe_925, retro_pabe_977,
Rattus norvegicus ENSRNOG00000046799 possible_ortholog 18 retrogenes
retro_rnor_1058, retro_rnor_1416, retro_rnor_1540, retro_rnor_1542, retro_rnor_2398, retro_rnor_2399, retro_rnor_2610, retro_rnor_2653, retro_rnor_2815, retro_rnor_2826, retro_rnor_2848, retro_rnor_2855, retro_rnor_2909, retro_rnor_292, retro_rnor_2948, retro_rnor_2949, retro_rnor_543, retro_rnor_898,
Ictidomys tridecemlineatus ENSSTOG00000019929 ortholog_one2one 2 retrogenes
retro_itri_337, retro_itri_945,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_154 89.71 100.00
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2. retro_ptro_386 89.38 100.00
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3. retro_ptro_451 84.53 66.54
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4. retro_ptro_542 86.99 53.31
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5. retro_ptro_686 81.75 100.00
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6. retro_ptro_1025 69.84 92.28
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7. retro_ptro_1110 83.11 54.41
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8. retro_ptro_1656 79.29 51.47
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9. retro_ptro_1817 88.78 72.06
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10. retro_ptro_2401 83.15 100.00
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11. retro_ptro_2545 63.68 68.01
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12. retro_ptro_2841 85.98 99.63
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13. retro_ptro_2964 89.01 100.00
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14. retro_ptro_3256 86.64 95.96
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Download FASTA sequences of all ENSPTRG00000009376 retrocopies