RetrogeneDB ID: | retro_ptro_3256 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:105118655..105119437(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHB | ||
Ensembl ID: | ENSPTRG00000009376 | ||
Aliases: | None | ||
Description: | Pan troglodytes prohibitin (PHB), mRNA. [Source:RefSeq mRNA;Acc:NM_001246403] |
Percent Identity: | 86.64 % |
Parental protein coverage: | 95.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCR |
MAAKVF.SIGKFGLALAV.G...NSALYNVDAGHRAVIFDRF.GVQDIVVGEGTHF.IPWVQKPIIFDC. | |
Retrocopy | MAAKVFVSIGKFGLALAVVGSMLNSALYNVDAGHRAVIFDRFCGVQDIVVGEGTHFPIPWVQKPIIFDCH |
Parental | SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI |
SRP.NVPVITGSKDLQNVNITL.IL..PVASQLP.IFTSI.EDYDERVLPSITT.ILKS.V..FDAGELI | |
Retrocopy | SRPLNVPVITGSKDLQNVNITLYILSWPVASQLPCIFTSIREDYDERVLPSITTKILKSMVSHFDAGELI |
Parental | TQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAA |
TQREL.SRQVSD.LTE.AATFGLILDDVSLTH.TFGKEFTEAVEAK.V.QQEAERARFVVEKAEQQK.AA | |
Retrocopy | TQRELLSRQVSDNLTE*AATFGLILDDVSLTHPTFGKEFTEAVEAKEVDQQEAERARFVVEKAEQQKIAA |
Parental | IISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLS-RSRNITYLP |
IISAE.DS.AA.LI.NSLATAGDGLIEL..LEAAEDI.YQLS..S.NITYLP | |
Retrocopy | IISAEVDSMAAKLIPNSLATAGDGLIELSVLEAAEDITYQLS<SSENITYLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 74 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 61 .05 RPM |
SRP007412_heart | 0 .03 RPM | 103 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 261 .10 RPM |
SRP007412_liver | 0 .00 RPM | 155 .59 RPM |
SRP007412_testis | 0 .00 RPM | 42 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4888 |
Gorilla gorilla | retro_ggor_3053 |
Pongo abelii | retro_pabe_3800 |
Callithrix jacchus | retro_cjac_4205 |