RetrogeneDB ID:

retro_mmur_287

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2199:254229..254692(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRSF3
Ensembl ID:ENSMICG00000004674
Aliases:None
Description:serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]


Retrocopy-Parental alignment summary:






>retro_mmur_287
ATGCATCATGATTTCCTGTCCATTGGACTCTAAAGTTTATATAAGTAATCTTGAAAACAACGGCAACAAGACTGAATTGG
AATGGACTTTTGGCTATTTATGGACCACTCTGAAGTGTGGGGGTTGCTAGAAACCCTCCCGGCTTTGCTTTGGTTGAATT
TGAAGATCTCAGAGAAGCAGGTGATGCTGTGTGAGAGCTAGATGGAAGAACATCATGTGGCTGCCGTGTAAGAGTGGAAC
TGTCAAATGGTGAAAAAAGAAGTTGAAATTGTGGCCCACCACCCTCTTGGGGTCATCACGCTCAAGGTGATTATCATAGA
AAGAGTCCTCCAACTCGCTACAGATCTCCGAGAAGGAGAAGCTTCTCTCGCAGCCAGGACAAGTCCCCTCCTAGAGATAG
GAAAAGAGAGAGATCACTGTCTCAGGAAGGAATCACAAGCTGTCCAGATCTTTCTCTAGGTCA

ORF - retro_mmur_287 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.43 %
Parental protein coverage: 93.9 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMHRD-SCPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDG
MH.D.SCPLD.KVY..NL.NNGNKTELE..FGY.YGPL.SV.VARNPPGFA.VEFED.R.A.DAV.ELDG
RetrocopyMHHD>SCPLDSKVYISNLENNGNKTELEWTFGY>YGPL*SVGVARNPPGFALVEFEDLREAGDAV*ELDG
ParentalRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERS
RT.CGCRVRVELSNGEKRS.N.GPPPSWG.....DY.R.SPP.R.RSPRRRSFSRS...S..RDR.RERS
RetrocopyRTSCGCRVRVELSNGEKRS*NCGPPPSWGHHAQGDYHRKSPPTRYRSPRRRSFSRSQDKSPPRDRKRERS
ParentalLSRE-RNHKPSRSFSRS
LS.E.RNHK.SRSFSRS
RetrocopyLSQE<RNHKLSRSFSRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_287 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_287 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000400065 retrocopies
Callithrix jacchus ENSCJAG000000160625 retrocopies
Homo sapiens ENSG000001120814 retrocopies
Loxodonta africana ENSLAFG000000181932 retrocopies
Microcebus murinus ENSMICG00000004674 5 retrocopies
Microcebus murinus ENSMICG000000089651 retrocopy
Myotis lucifugus ENSMLUG000000106716 retrocopies
Mustela putorius furoENSMPUG000000142151 retrocopy
Mus musculus ENSMUSG000000711729 retrocopies
Otolemur garnettii ENSOGAG000000005026 retrocopies
Ochotona princeps ENSOPRG000000060063 retrocopies
Rattus norvegicus ENSRNOG0000000052011 retrocopies
Sus scrofa ENSSSCG000000015641 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000142805 retrocopies
Tarsius syrichta ENSTSYG000000134983 retrocopies
Tursiops truncatus ENSTTRG0000001344711 retrocopies
Vicugna pacos ENSVPAG000000054811 retrocopy



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