RetrogeneDB ID: | retro_rnor_1339 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:26156514..26156781(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSRNOG00000000520 | ||
Aliases: | Srsf3, Sfrs3 | ||
Description: | splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372] |
Percent Identity: | 78.65 % |
Parental protein coverage: | 54.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNH |
VRVELSNGEKRSRN.G.PPS.GR.P.DD.RRRSPPP..R.PR.RSFS.S.S.SLSR.RRRERSLSRERNH | |
Retrocopy | VRVELSNGEKRSRNHGLPPS*GRHPQDDHRRRSPPPQLRPPRKRSFS*SWSSSLSRERRRERSLSRERNH |
Parental | KPSRSFSRSRSRSRSNERK |
.PS.SFSRSRS.S.SNE.K | |
Retrocopy | EPSPSFSRSRSQSKSNEGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .92 RPM |
SRP017611_liver | 0 .00 RPM | 38 .86 RPM |