RetrogeneDB ID: | retro_rnor_1647 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:146822099..146822587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSRNOG00000000520 | ||
Aliases: | Srsf3, Sfrs3 | ||
Description: | splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372] |
Percent Identity: | 81.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MHRDSC.LDCKV.VGNLGNN.NKTE.ER..GYYGPLRSVWVAR.PP.FAF.EFEDP.DAADAV.ELDGRT | |
Retrocopy | MHRDSCTLDCKVFVGNLGNNENKTEFERTLGYYGPLRSVWVARKPPDFAFIEFEDP*DAADAVHELDGRT |
Parental | LCGC-RVRVELSNGEKRSRNRGPPPSWGRRPRDDYR-RRSPPPRRRSPRRRSFSR-SRSRSLSRDRRRER |
LCGC...RVEL.N.EKRSRNRGPPPSWG.R...D...RRSP.P.RRSP.RRSFSR.S.SRSLSRDRR.ER | |
Retrocopy | LCGC<HLRVELLNAEKRSRNRGPPPSWGCRHPGDEA<RRSPLPQRRSP-RRSFSR>SCSRSLSRDRRKER |
Parental | SLSRERNHKPSRSFSRSRSRSRSNERK |
SLS.ERNHKPSRSF.RSRSRSRSNERK | |
Retrocopy | SLSLERNHKPSRSFARSRSRSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .92 RPM |
SRP017611_liver | 0 .00 RPM | 38 .86 RPM |