RetrogeneDB ID: | retro_rnor_1321 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:71099956..71100244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSRNOG00000000520 | ||
Aliases: | Srsf3, Sfrs3 | ||
Description: | splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372] |
Percent Identity: | 61.86 % |
Parental protein coverage: | 59.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRER |
G.T...C..R.ELSNGEKRS.N...P.S.G..P.D.Y.R.SPP...RSPRR..FS.S.SR.LSRDR.R.R | |
Retrocopy | GGTPSSCHIRLELSNGEKRSQNCDSPLS*GCPP*DVYCRKSPPLPHRSPRR-CFSQSLSRPLSRDRIR*R |
Parental | SLSRERNHKPSRSFSRSRSRSRSNERK |
SLS.ERNHKPS..F.RS..RS.SNE.K | |
Retrocopy | SLSPERNHKPSLYFFRSHQRSMSNEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .21 RPM |
SRP017611_kidney | 0 .07 RPM | 69 .92 RPM |
SRP017611_liver | 0 .07 RPM | 38 .86 RPM |