Parental gene:

Srsf3, ENSRNOG00000000520

Aliases:Srsf3, Sfrs3
Description:splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372]
Organism:Rat (Rattus norvegicus)
Coordinates:20:8534914..8544847(+)


>ENSRNOG00000000520
ATGCATCGTGATTCCTGTCCCTTGGACTGTAAGGTTTATGTAGGTAATCTTGGAAACAATGGGAACAAGACTGAATTAGA
ACGGGCTTTTGGCTATTATGGACCACTCCGAAGTGTGTGGGTTGCTCGAAACCCTCCTGGCTTTGCTTTCGTCGAATTTG
AGGATCCCCGAGATGCTGCTGATGCTGTCCGAGAGCTAGATGGAAGAACACTATGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAGAGAAGTCGGAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGTCCTCGAGATGATTACCGCAGGAG
GAGTCCTCCACCTCGGCGCAGATCCCCAAGAAGGAGAAGCTTTTCGCGAAGCCGGAGCAGGTCTCTTTCTAGAGATAGGA
GAAGAGAAAGGTCTCTGTCTCGTGAGAGAAATCACAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG

Library Parental gene expression (RPM)
SRP017611_brain 65 .21 RPM
SRP017611_kidney 69 .92 RPM
SRP017611_liver 38 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000040006 ortholog_one2one 5 retrogenes
retro_btau_1176, retro_btau_1442, retro_btau_1445, retro_btau_1665, retro_btau_1813,
Callithrix jacchus ENSCJAG00000016062 ortholog_one2many 5 retrogenes
retro_cjac_1035, retro_cjac_1969, retro_cjac_2006, retro_cjac_620, retro_cjac_746,
Homo sapiens ENSG00000112081 ortholog_one2one 4 retrogenes
retro_hsap_2140, retro_hsap_2299, retro_hsap_2304, retro_hsap_757,
Loxodonta africana ENSLAFG00000018193 ortholog_one2one 2 retrogenes
retro_lafr_1219, retro_lafr_80,
Microcebus murinus ENSMICG00000004674 ortholog_one2one 5 retrogenes
retro_mmur_1090, retro_mmur_160, retro_mmur_287, retro_mmur_710, retro_mmur_916,
Myotis lucifugus ENSMLUG00000010671 ortholog_one2many 6 retrogenes
retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Mustela putorius furo ENSMPUG00000014215 ortholog_one2one 1 retrogene
retro_mputfur_613,
Mus musculus ENSMUSG00000071172 ortholog_one2one 9 retrogenes
retro_mmus_100, retro_mmus_1347, retro_mmus_1749, retro_mmus_2294, retro_mmus_2337, retro_mmus_2433, retro_mmus_2654, retro_mmus_2933, retro_mmus_3629,
Otolemur garnettii ENSOGAG00000000502 possible_ortholog 6 retrogenes
retro_ogar_1850, retro_ogar_1959, retro_ogar_2131, retro_ogar_2783, retro_ogar_597, retro_ogar_803,
Ochotona princeps ENSOPRG00000006006 ortholog_one2one 3 retrogenes
retro_opri_1037, retro_opri_158, retro_opri_545,
Rattus norvegicus ENSRNOG00000005513 other_paralog 1 retrogene
retro_rnor_2900,
Rattus norvegicus ENSRNOG00000006380 other_paralog 1 retrogene
retro_rnor_1752,
Rattus norvegicus ENSRNOG00000027360 within_species_paralog 11 retrogenes
retro_rnor_1535, retro_rnor_1977, retro_rnor_1984, retro_rnor_2419, retro_rnor_2420, retro_rnor_2421, retro_rnor_2495, retro_rnor_2501, retro_rnor_2502, retro_rnor_2503, retro_rnor_478,
Sus scrofa ENSSSCG00000001564 ortholog_one2one 1 retrogene
retro_sscr_1038,
Ictidomys tridecemlineatus ENSSTOG00000014280 ortholog_one2one 5 retrogenes
retro_itri_123, retro_itri_502, retro_itri_664, retro_itri_857, retro_itri_901,
Tarsius syrichta ENSTSYG00000013498 ortholog_one2one 3 retrogenes
retro_tsyr_1867, retro_tsyr_2163, retro_tsyr_848,
Tursiops truncatus ENSTTRG00000013447 ortholog_one2one 11 retrogenes
retro_ttru_105, retro_ttru_1195, retro_ttru_1577, retro_ttru_1628, retro_ttru_1639, retro_ttru_1653, retro_ttru_1677, retro_ttru_1731, retro_ttru_1892, retro_ttru_610, retro_ttru_916,
Vicugna pacos ENSVPAG00000005481 ortholog_one2one 1 retrogene
retro_vpac_541,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_634 70.45 79.88
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2. retro_rnor_728 71.76 100.00
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3. retro_rnor_790 78.31 100.00
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4. retro_rnor_1010 76.36 67.07
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5. retro_rnor_1283 98.17 100.00
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6. retro_rnor_1321 61.86 59.15
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7. retro_rnor_1339 78.65 54.27
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8. retro_rnor_1647 81.44 100.00
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9. retro_rnor_1697 71.88 78.05
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10. retro_rnor_1889 76.53 59.15
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11. retro_rnor_2424 91.52 100.00
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Download FASTA sequences of all ENSRNOG00000000520 retrocopies