RetrogeneDB ID: | retro_mmus_1612 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:8362106..8362445(-) | ||
Located in intron of: | ENSMUSG00000073468 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fam32a | ||
Ensembl ID: | ENSMUSG00000003039 | ||
Aliases: | Fam32a, 2510049I19Rik, AW822030, OTAG-12, Otag12 | ||
Description: | family with sequence similarity 32, member A [Source:MGI Symbol;Acc:MGI:1915172] |
Percent Identity: | 79.65 % |
Parental protein coverage: | 99.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EAYEQVQKGPLKLKGVAELGVTKRKKKK--KDKDKAKMLEAMGTSKKSEEEKRRCLDKRTPAQAAFEKMQ |
E.Y.QVQKGPLKLKGVAELGV.K....K...DKDKAKMLEAMGT.KKSEEEKRRCLDKR...QA.FEKMQ | |
Retrocopy | EVYKQVQKGPLKLKGVAELGVMKGRRRK*DEDKDKAKMLEAMGTRKKSEEEKRRCLDKRMLVQAGFEKMQ |
Parental | EKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKVSWTK |
E..Q.ER.LKK.SKTHKQRVEDF..HLDTLTEHYDIP.VSWTK | |
Retrocopy | EEQQKERTLKKTSKTHKQRVEDFK*HLDTLTEHYDIPRVSWTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 62 .19 RPM |
SRP007412_cerebellum | 0 .04 RPM | 73 .16 RPM |
SRP007412_heart | 0 .00 RPM | 28 .14 RPM |
SRP007412_kidney | 0 .02 RPM | 70 .05 RPM |
SRP007412_liver | 0 .03 RPM | 52 .76 RPM |
SRP007412_testis | 0 .05 RPM | 25 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046846 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014097 | 4 retrocopies | |
Homo sapiens | ENSG00000105058 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022418 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000009394 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013721 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000000585 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014904 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016048 | 1 retrocopy | |
Mus musculus | ENSMUSG00000003039 | 2 retrocopies |
retro_mmus_1612 , retro_mmus_3017,
|
Nomascus leucogenys | ENSNLEG00000005441 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002238 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027763 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010641 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000039528 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013855 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009106 | 1 retrocopy |