RetrogeneDB ID:

retro_nleu_192

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397261.1:61595349..61595624(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM32A
Ensembl ID:ENSNLEG00000005441
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_192
ATGACAGCCTATAAGCAGGTCCAGAAGGGACCCCTTTAGCTGAAAGGCATCACAGAGCTCAGTGTGATCAAGCAGAAGAA
GAAAAAGAAGGACAAAGACAAGGCAAACTTCCTGAAAGCCATGGCAATGAGCAAAAAGAACAAGGGGGAGAAGCAACACA
GCCTGGACAAGCGGACCCCAGCCCAGATGGCCTCAGAAAGATGCAAGAGAAGTGTCAAATGGAAAGGATCCTGAAGAAAG
CATCCGAAATCTACAAGCAGAGAGTGCAGGACTTC

ORF - retro_nleu_192 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.04 %
Parental protein coverage: 82.14 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMEAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLEAMGTSKKNEEEKRRGLDKRTPAQAAFE-KMQ
M.AY.QVQKGPL.LKG..EL.V.K.KKKKKDKDKA..L.AM..SKKN..EK...LDKRTPAQ.A.E.KMQ
RetrocopyMTAYKQVQKGPL*LKGITELSVIKQKKKKKDKDKANFLKAMAMSKKNKGEKQHSLDKRTPAQMASE<KMQ
ParentalEKRQMERILKKASKTHKQRVEDF
EK.QMERILKKAS...KQRV.DF
RetrocopyEKCQMERILKKASEIYKQRVQDF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_192 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000468461 retrocopy
Callithrix jacchus ENSCJAG000000140974 retrocopies
Homo sapiens ENSG000001050584 retrocopies
Gorilla gorilla ENSGGOG000000224184 retrocopies
Loxodonta africana ENSLAFG000000093941 retrocopy
Microcebus murinus ENSMICG000000137213 retrocopies
Myotis lucifugus ENSMLUG000000005852 retrocopies
Monodelphis domestica ENSMODG000000149041 retrocopy
Mustela putorius furoENSMPUG000000160481 retrocopy
Mus musculus ENSMUSG000000030392 retrocopies
Nomascus leucogenys ENSNLEG00000005441 3 retrocopies
retro_nleu_192 , retro_nleu_2227, retro_nleu_2790,
Otolemur garnettii ENSOGAG000000277632 retrocopies
Pan troglodytes ENSPTRG000000106414 retrocopies
Rattus norvegicus ENSRNOG000000395281 retrocopy
Sus scrofa ENSSSCG000000138552 retrocopies
Tarsius syrichta ENSTSYG000000091061 retrocopy



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