RetrogeneDB ID: | retro_ogar_3348 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873788.1:502625..502947(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000027763 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.78 % |
Parental protein coverage: | 98.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MEAYEQVQKGPL-KLKGVAELGVTKRKKKKKDKDKAKLLE-AMGTSKKNEEEKR-RGLDKRTPAQVAFEK |
MEAYEQVQKGP..KLKG.AELG.TK.KKK..DKDKAKLLE...GTSKKNEEEK...GLD..TPA.V.FEK | |
Retrocopy | MEAYEQVQKGPR<KLKGTAELGMTKWKKKE-DKDKAKLLE<MTGTSKKNEEEKW<AGLDRQTPAPVTFEK |
Parental | MQEKRQMERILKKASKTH-KQRVE-DFNRHLDTLTEHYDIPKVSW |
MQEK.QMERIL.KASK...KQ.VE.DFNRHL.TLTEH....KVSW | |
Retrocopy | MQEK*QMERILNKASKIQ<KQKVE<DFNRHLGTLTEHHNVAKVSW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046846 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014097 | 4 retrocopies | |
Homo sapiens | ENSG00000105058 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022418 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000009394 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000013721 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000000585 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000014904 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016048 | 1 retrocopy | |
Mus musculus | ENSMUSG00000003039 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005441 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002238 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027763 | 2 retrocopies |
retro_ogar_3348 , retro_ogar_949,
|
Pan troglodytes | ENSPTRG00000010641 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000039528 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013855 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000009106 | 1 retrocopy |