RetrogeneDB ID:

retro_ogar_949

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873531.1:25087649..25087983(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000029142
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000027763
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_949
ATGGAGGCCTATGAGCAGGTCCAAAAGGGACCCCTGAAGCTGAAAGGCGTTGCAGAGCTTGGTGTGACCAAGCAGAAGAA
GAGAAAGAAGGATGAAGACAAGGCAAAACTCCTGGAGCAATGGGAACGAGCAAGAAGAATGAGGAGGAGAAGTGGTGTGG
CCTGGACAAGAGGACCCCGGCCCAGGTGGCCTTCGAGAAGATGCAGGAGAAGCGGCAGATAGAAAGAATCCTGAAGAAAG
CATCTAAAACCCAGAAGCAGAGAGTAGAGGACTTCAACAGACACTGGATACACTCACAGAGCAGTACGACGTTCCCCAAG
TCAGCGGGACGGAG

ORF - retro_ogar_949 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.72 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMEAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLE-AMGTSKKNEEEKRRGLDKRTPAQVAFEKMQ
MEAYEQVQKGPLKLKGVAELGVTK.KK.KKD.DKAKLLE.AMGTSKKNEEEK..GLDKRTPAQVAFEKMQ
RetrocopyMEAYEQVQKGPLKLKGVAELGVTKQKKRKKDEDKAKLLE<AMGTSKKNEEEKWCGLDKRTPAQVAFEKMQ
ParentalEKRQMERILKKASKTHKQRVEDFNRH-LDTLTEHYDIPKVSWTK
EKRQ.ERILKKASKT.KQRVEDFNRH.LDTLTE.YD.P.VS.T.
RetrocopyEKRQIERILKKASKTQKQRVEDFNRH<LDTLTEQYDVPQVSGTE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_949 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000468461 retrocopy
Callithrix jacchus ENSCJAG000000140974 retrocopies
Homo sapiens ENSG000001050584 retrocopies
Gorilla gorilla ENSGGOG000000224184 retrocopies
Loxodonta africana ENSLAFG000000093941 retrocopy
Microcebus murinus ENSMICG000000137213 retrocopies
Myotis lucifugus ENSMLUG000000005852 retrocopies
Monodelphis domestica ENSMODG000000149041 retrocopy
Mustela putorius furoENSMPUG000000160481 retrocopy
Mus musculus ENSMUSG000000030392 retrocopies
Nomascus leucogenys ENSNLEG000000054413 retrocopies
Oryctolagus cuniculus ENSOCUG000000022381 retrocopy
Otolemur garnettii ENSOGAG00000027763 2 retrocopies
retro_ogar_3348, retro_ogar_949 ,
Pan troglodytes ENSPTRG000000106414 retrocopies
Rattus norvegicus ENSRNOG000000395281 retrocopy
Sus scrofa ENSSSCG000000138552 retrocopies
Tarsius syrichta ENSTSYG000000091061 retrocopy



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