RetrogeneDB ID:

retro_ptro_684

Retrocopy
location
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:38365653..38365919(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM32A
Ensembl ID:ENSPTRG00000010641
Aliases:None
Description:family with sequence similarity 32, member A [Source:HGNC Symbol;Acc:24563]


Retrocopy-Parental alignment summary:






>retro_ptro_684
GCCTCTGAGCAGGTCCAGAAGGGACCCCTTTAGCTGAAAGGCATCGCAGAGCTCAGTGTGATCAAGCAGAAGAAGAAAAA
GAAGGACAAAGGCAAGGCAAATTTCCTGAAAGCCATGGCAATGAGCAAAAAGAACAAGGGGGAGAAGCGACACAGCCTGG
ACAAGTGGACCCCAGCCCAGATGGCCTTAGAAAGATGCAAGAGAAATGTCAAATGGAAAGGATCCTGAAGAAAGCATCCG
AAATCTACAAGCGGAGAGGGGAGGAC

ORF - retro_ptro_684 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.11 %
Parental protein coverage: 79.46 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAYEQVQKGPLKLKGVAELGVTKRKKKKKDKDKAKLLEAMGTSKKNEEEKRRGLDKRTPAQAAFE-KMQEK
A.EQVQKGPL.LKG.AEL.V.K.KKKKKDK.KA..L.AM..SKKN..EKR..LDK.TPAQ.A.E.KMQEK
RetrocopyASEQVQKGPL*LKGIAELSVIKQKKKKKDKGKANFLKAMAMSKKNKGEKRHSLDKWTPAQMALE<KMQEK
ParentalRQMERILKKASKTHKQRVED
.QMERILKKAS...K.R.ED
RetrocopyCQMERILKKASEIYKRRGED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 49 .30 RPM
SRP007412_cerebellum 0 .04 RPM 41 .48 RPM
SRP007412_heart 0 .00 RPM 22 .33 RPM
SRP007412_kidney 0 .00 RPM 73 .12 RPM
SRP007412_liver 0 .00 RPM 56 .99 RPM
SRP007412_testis 0 .00 RPM 18 .23 RPM
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_684 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_684 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ptro_684 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1116
Gorilla gorilla retro_ggor_872

Parental genes homology:
Parental genes homology involve 16 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000468461 retrocopy
Callithrix jacchus ENSCJAG000000140974 retrocopies
Homo sapiens ENSG000001050584 retrocopies
Gorilla gorilla ENSGGOG000000224184 retrocopies
Loxodonta africana ENSLAFG000000093941 retrocopy
Microcebus murinus ENSMICG000000137213 retrocopies
Myotis lucifugus ENSMLUG000000005852 retrocopies
Monodelphis domestica ENSMODG000000149041 retrocopy
Mustela putorius furoENSMPUG000000160481 retrocopy
Mus musculus ENSMUSG000000030392 retrocopies
Nomascus leucogenys ENSNLEG000000054413 retrocopies
Otolemur garnettii ENSOGAG000000277632 retrocopies
Pan troglodytes ENSPTRG00000010641 4 retrocopies
Rattus norvegicus ENSRNOG000000395281 retrocopy
Sus scrofa ENSSSCG000000138552 retrocopies
Tarsius syrichta ENSTSYG000000091061 retrocopy



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