RetrogeneDB ID: | retro_mmus_1858 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 19:16490524..16490857(-) | ||
Located in intron of: | ENSMUSG00000024697 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nip7 | ||
Ensembl ID: | ENSMUSG00000031917 | ||
Aliases: | Nip7, 1110017C15Rik, 6330509M23Rik, AA408773, AA410017, PEachy | ||
Description: | nuclear import 7 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913414] |
Percent Identity: | 82.61 % |
Parental protein coverage: | 63.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYS |
LGT.FGKFTKT.KF.LH.TALDY.APYAKYKVW.KPGAEQSFLYGNHVLKS.L.RITENT.QYQG.VVYS | |
Retrocopy | LGTRFGKFTKTPKFHLHITALDYPAPYAKYKVWIKPGAEQSFLYGNHVLKSSLVRITENTCQYQGEVVYS |
Parental | MADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT |
MADIPLGFGVAAK.....RKVD..AIVVF.QADI..YVRHEETLT | |
Retrocopy | MADIPLGFGVAAKG----RKVDLVAIVVFQQADIVDYVRHEETLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .24 RPM |
SRP007412_heart | 0 .00 RPM | 9 .81 RPM |
SRP007412_kidney | 0 .04 RPM | 13 .74 RPM |
SRP007412_liver | 0 .00 RPM | 11 .96 RPM |
SRP007412_testis | 0 .05 RPM | 9 .70 RPM |