RetrogeneDB ID: | retro_ocun_1013 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 19:4873466..4874006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000004843 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NIP7 | ||
Ensembl ID: | ENSOCUG00000017652 | ||
Aliases: | None | ||
Description: | NIP7, nucleolar pre-rRNA processing protein [Source:HGNC Symbol;Acc:24328] |
Percent Identity: | 98.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRPLTEEETRVMFEKMAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLVSLGTCF |
MRPLTEEETRVMFEKMAKYIGENLQLLVDRP.GTYCFRLHNDRVYYVSEKILKLAANISGDKLVSLGTCF | |
Retrocopy | MRPLTEEETRVMFEKMAKYIGENLQLLVDRPNGTYCFRLHNDRVYYVSEKILKLAANISGDKLVSLGTCF |
Parental | GKFTKTHKFRLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADIP |
GKFTKTHKFRLHITALDYLAPYAKYKVWIKPGA.QSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADIP | |
Retrocopy | GKFTKTHKFRLHITALDYLAPYAKYKVWIKPGAKQSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADIP |
Parental | LGFGVAAKSTQDCRKVDPMAIVVFHQADVGEYVRHEETLT |
LGFGVAAKSTQDCRKVDPMAIVVFHQADVGEYVRHEETLT | |
Retrocopy | LGFGVAAKSTQDCRKVDPMAIVVFHQADVGEYVRHEETLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .47 RPM |
SRP017611_liver | 0 .00 RPM | 1 .85 RPM |