Parental gene: | Nip7, ENSRNOG00000020391 |
| Aliases: | Nip7, CGI-37, Nip7p, pEachy |
| Description: | 60S ribosome subunit biogenesis protein NIP7 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9WV50] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 19:50121522..50123631(+) |
>ENSRNOG00000020391
ATGAGGCCTTTGACTGAAGAAGAGACCCGCGTAATGTTTGAGAAGATTGCGAAATACATTGGAGAGAATCTACAACTCCT
GGTGGACAGACCGGACGGCACCTACTGTTTCCGGCTGCACAACGACCGAGTGTACTATGTGAGTGAGATGATCCTGAAGC
TGGCCGCCAACATCTCCGGAGATAAGCTAGTGTCCCTGGGTACGTGTTTTGGAAAGTTTACCAAGACCCACAAGTTCCGG
TTGCACGTTACAGCTCTGGATTTCCTTGCACCCTACGCCAAGTATAAAGTGTGGATAAAGCCTGGAGCTGAGCAGTCCTT
CTTGTATGGAAACCATGTGTTGAAATCCGGTCTGGGTCGGATCACTGAAAACACGTCTCAGTACCAGGGAGTAGTGGTTT
ATTCCATGGCAGACGTTCCTTTGGGTTTTGGGGTGGCAGCAAAGTCTACCCAAGACTGCAGGAAAGTGGACCCCATGGCA
ATTGTGGTGTTCCATCAAGCAGACATTGGGGAGTACATACGCCATGAAGAGACGTTAACTTAA
ATGAGGCCTTTGACTGAAGAAGAGACCCGCGTAATGTTTGAGAAGATTGCGAAATACATTGGAGAGAATCTACAACTCCT
GGTGGACAGACCGGACGGCACCTACTGTTTCCGGCTGCACAACGACCGAGTGTACTATGTGAGTGAGATGATCCTGAAGC
TGGCCGCCAACATCTCCGGAGATAAGCTAGTGTCCCTGGGTACGTGTTTTGGAAAGTTTACCAAGACCCACAAGTTCCGG
TTGCACGTTACAGCTCTGGATTTCCTTGCACCCTACGCCAAGTATAAAGTGTGGATAAAGCCTGGAGCTGAGCAGTCCTT
CTTGTATGGAAACCATGTGTTGAAATCCGGTCTGGGTCGGATCACTGAAAACACGTCTCAGTACCAGGGAGTAGTGGTTT
ATTCCATGGCAGACGTTCCTTTGGGTTTTGGGGTGGCAGCAAAGTCTACCCAAGACTGCAGGAAAGTGGACCCCATGGCA
ATTGTGGTGTTCCATCAAGCAGACATTGGGGAGTACATACGCCATGAAGAGACGTTAACTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 5 .72 RPM |
| SRP017611_kidney | 10 .61 RPM |
| SRP017611_brain | 7 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007542 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000001666 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000029835 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000015364 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006821 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000132603 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022785 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000009664 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011835 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000016635 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000002782 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031917 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005492 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017652 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008066 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000007503 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008279 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000000303 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012871 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010012 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_485 | 75.27 | 98.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_655 | 83.12 | 85.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_865 | 82.52 | 78.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1279 | 92.82 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1566 | 77.89 | 52.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1567 | 64.71 | 55.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_1674 | 75.00 | 93.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_rnor_1676 | 76.86 | 66.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000020391 retrocopies