Parental gene:

NIP7, ENSCJAG00000015364

Aliases:None
Description:NIP7, nucleolar pre-rRNA processing protein [Source:HGNC Symbol;Acc:24328]
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:23198685..23200618(+)


>ENSCJAG00000015364
ATGCGGCCTTTGACTGAAGAGGAGACCCGTGTCATGTTGAAGATCGCGAAATACATTGGGGAGAATCTTCAGCTGCTGGT
GGACCGGCCAGACGGCACCTACTGTTTCCGGCTGCACAACGACCGGGTGTACTATGTGAGTGAGAAGATTATGAAGCTGG
CCGCCAATATCTCTGGAGACAAGCTGGTGTCTCTGGGGACCTGCTTCGGAAAGTTCACTAAGACCCACAAGTTTCGGTTG
CACGTCACAGCCCTGGATTACCTTGCACCTTATGCCAAGTATAAAGTGTGGATAAAGCCTGGCGCAGAGCAGTCCTTCCT
TTATGGGAACCATGTGTTGAAATCTGGTCTGGGTCGAATCACCGAAAATACTTCTCAGTACCAGGGCGTGGTGGTATACT
CCATGGCAGACGTCCCTTTGGGTTTTGGGGTGGCAGCAAAATCTACACAAGACTGCAGAAAAGTAGACCCCATGGCGATT
GTGGTGTTTCATCAAGCAGACATTGGGGAATATGTGCGGCATGAAGAGACGCTGACTTAA

Library Parental gene expression (RPM)
SRP051959_colon 2 .33 RPM
SRP051959_heart 2 .32 RPM
SRP051959_kidney 1 .89 RPM
SRP051959_liver 2 .23 RPM
SRP051959_lung 2 .44 RPM
SRP051959_lymph_node 2 .83 RPM
SRP051959_skeletal_muscle 3 .63 RPM
SRP051959_spleen 2 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007542 ortholog_one2one 1 retrogene
retro_amel_938,
Bos taurus ENSBTAG00000001666 ortholog_one2one 1 retrogene
retro_btau_353,
Canis familiaris ENSCAFG00000029835 ortholog_one2one 2 retrogenes
retro_cfam_1346, retro_cfam_1682,
Dasypus novemcinctus ENSDNOG00000006821 ortholog_one2one 2 retrogenes
retro_dnov_2114, retro_dnov_74,
Homo sapiens ENSG00000132603 ortholog_one2one 2 retrogenes
retro_hsap_2707, retro_hsap_3648,
Gorilla gorilla ENSGGOG00000022785 ortholog_one2one 2 retrogenes
retro_ggor_1886, retro_ggor_2464,
Microcebus murinus ENSMICG00000009664 ortholog_one2many 1 retrogene
retro_mmur_5,
Myotis lucifugus ENSMLUG00000011835 ortholog_one2one 3 retrogenes
retro_mluc_1119, retro_mluc_2171, retro_mluc_2508,
Macaca mulatta ENSMMUG00000016635 ortholog_one2many 2 retrogenes
retro_mmul_1801, retro_mmul_192,
Monodelphis domestica ENSMODG00000002782 ortholog_one2one 2 retrogenes
retro_mdom_1011, retro_mdom_1709,
Mus musculus ENSMUSG00000031917 ortholog_one2one 2 retrogenes
retro_mmus_1858, retro_mmus_2281,
Nomascus leucogenys ENSNLEG00000005492 ortholog_one2one 2 retrogenes
retro_nleu_1579, retro_nleu_510,
Oryctolagus cuniculus ENSOCUG00000017652 ortholog_one2one 5 retrogenes
retro_ocun_1013, retro_ocun_1262, retro_ocun_1292, retro_ocun_491, retro_ocun_721,
Otolemur garnettii ENSOGAG00000008066 ortholog_one2one 2 retrogenes
retro_ogar_1619, retro_ogar_2453,
Pongo abelii ENSPPYG00000007503 ortholog_one2one 2 retrogenes
retro_pabe_2258, retro_pabe_2995,
Pan troglodytes ENSPTRG00000008279 ortholog_one2one 2 retrogenes
retro_ptro_1828, retro_ptro_2473,
Rattus norvegicus ENSRNOG00000020391 ortholog_one2one 8 retrogenes
retro_rnor_1279, retro_rnor_1566, retro_rnor_1567, retro_rnor_1674, retro_rnor_1676, retro_rnor_485, retro_rnor_655, retro_rnor_865,
Sorex araneus ENSSARG00000000303 ortholog_one2one 1 retrogene
retro_sara_665,
Ictidomys tridecemlineatus ENSSTOG00000012871 ortholog_one2one 1 retrogene
retro_itri_1368,
Tursiops truncatus ENSTTRG00000010012 ortholog_one2one 2 retrogenes
retro_ttru_1783, retro_ttru_676,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2466 70.94 63.69
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2. retro_cjac_4212 84.07 100.00
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Download FASTA sequences of all ENSCJAG00000015364 retrocopies